miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27677 5' -54.2 NC_005882.1 + 23728 0.66 0.69167
Target:  5'- gGUUCgGGCGcaagcUGAUCGGCGAcGG-CGcGCu -3'
miRNA:   3'- -CGAG-CCGU-----ACUAGCCGUU-CCaGCuCG- -5'
27677 5' -54.2 NC_005882.1 + 13418 0.66 0.69167
Target:  5'- aGCUUGGCuucgAUGA-CGGUcuGGUUGcGCa -3'
miRNA:   3'- -CGAGCCG----UACUaGCCGuuCCAGCuCG- -5'
27677 5' -54.2 NC_005882.1 + 483 0.66 0.69167
Target:  5'- aGCUCGGCAUGGUUGucgccGCGGaauucGUCGAa- -3'
miRNA:   3'- -CGAGCCGUACUAGC-----CGUUc----CAGCUcg -5'
27677 5' -54.2 NC_005882.1 + 31377 0.66 0.69167
Target:  5'- uGgUCGGCGUGAcgCGGCugccGG-CGcAGCc -3'
miRNA:   3'- -CgAGCCGUACUa-GCCGuu--CCaGC-UCG- -5'
27677 5' -54.2 NC_005882.1 + 1912 0.66 0.680426
Target:  5'- uGCUCGaugucGCGguuacgcGUUGGCGAuGUCGAGCg -3'
miRNA:   3'- -CGAGC-----CGUac-----UAGCCGUUcCAGCUCG- -5'
27677 5' -54.2 NC_005882.1 + 18823 0.66 0.680426
Target:  5'- cGC-CGGCGUGAUaCGcGCGaugcAGGgagCGcAGCa -3'
miRNA:   3'- -CGaGCCGUACUA-GC-CGU----UCCa--GC-UCG- -5'
27677 5' -54.2 NC_005882.1 + 28573 0.66 0.680426
Target:  5'- cCUCGGgAaucUGGUCGGuCAGGGaCGccAGCg -3'
miRNA:   3'- cGAGCCgU---ACUAGCC-GUUCCaGC--UCG- -5'
27677 5' -54.2 NC_005882.1 + 31026 0.66 0.680426
Target:  5'- --gCGGCGUGGcgcggucgaUCGGCAu-GUCGAGa -3'
miRNA:   3'- cgaGCCGUACU---------AGCCGUucCAGCUCg -5'
27677 5' -54.2 NC_005882.1 + 19480 0.66 0.679298
Target:  5'- cGUUCGGCGaaugcgcUGGUCGGCGcaucgucuuGUCGcGCg -3'
miRNA:   3'- -CGAGCCGU-------ACUAGCCGUuc-------CAGCuCG- -5'
27677 5' -54.2 NC_005882.1 + 35912 0.66 0.669132
Target:  5'- aUUCGGCGUGAcuuucCGGCAgaAGGcagCGAucGCg -3'
miRNA:   3'- cGAGCCGUACUa----GCCGU--UCCa--GCU--CG- -5'
27677 5' -54.2 NC_005882.1 + 26935 0.66 0.655532
Target:  5'- uUUCGGCAUGGggcgggcgcggcCGGCAAGuUCGcGGCc -3'
miRNA:   3'- cGAGCCGUACUa-----------GCCGUUCcAGC-UCG- -5'
27677 5' -54.2 NC_005882.1 + 19003 0.66 0.646445
Target:  5'- cGC-CGGCGUGG--GGCuGGGUCGcuucucucucGGCg -3'
miRNA:   3'- -CGaGCCGUACUagCCGuUCCAGC----------UCG- -5'
27677 5' -54.2 NC_005882.1 + 5321 0.66 0.646445
Target:  5'- aGCuUCGGCGUGAccuuccgacuuUcCGGCGAGGcaaccgccaauUCGcGGCa -3'
miRNA:   3'- -CG-AGCCGUACU-----------A-GCCGUUCC-----------AGC-UCG- -5'
27677 5' -54.2 NC_005882.1 + 3689 0.66 0.635075
Target:  5'- cGgUCGGCgacGUGAUCGacGCAAGcggcGUCGAcGCg -3'
miRNA:   3'- -CgAGCCG---UACUAGC--CGUUC----CAGCU-CG- -5'
27677 5' -54.2 NC_005882.1 + 14416 0.66 0.635075
Target:  5'- -gUCGGCGcaccauuucugcUGAUaCGGCAgcAGGacggCGGGCg -3'
miRNA:   3'- cgAGCCGU------------ACUA-GCCGU--UCCa---GCUCG- -5'
27677 5' -54.2 NC_005882.1 + 17145 0.66 0.631663
Target:  5'- cGCgUCGGCAUucaggucgcGcgCGGaCAAGGuguucagugcggcgUCGAGCg -3'
miRNA:   3'- -CG-AGCCGUA---------CuaGCC-GUUCC--------------AGCUCG- -5'
27677 5' -54.2 NC_005882.1 + 18536 0.67 0.628251
Target:  5'- cGUUaCGGC-UGAU-GGCGAgcugcaaccugaagcGGUCGAGCc -3'
miRNA:   3'- -CGA-GCCGuACUAgCCGUU---------------CCAGCUCG- -5'
27677 5' -54.2 NC_005882.1 + 27865 0.67 0.612337
Target:  5'- cGCUCGcGCuucg-CGaGCAGGucGUCGAGCa -3'
miRNA:   3'- -CGAGC-CGuacuaGC-CGUUC--CAGCUCG- -5'
27677 5' -54.2 NC_005882.1 + 32167 0.67 0.612337
Target:  5'- gGCcggCGGCAcGAUCGGUucGGUa-GGCu -3'
miRNA:   3'- -CGa--GCCGUaCUAGCCGuuCCAgcUCG- -5'
27677 5' -54.2 NC_005882.1 + 3217 0.67 0.60099
Target:  5'- cGCUCGcGCAgcacGUCGgacgacuucGCGAGGUaCGGGCc -3'
miRNA:   3'- -CGAGC-CGUac--UAGC---------CGUUCCA-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.