miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27678 3' -56.2 NC_005882.1 + 390 0.66 0.560975
Target:  5'- aACAgg--UCGCGUUGGCGaGCGgcGAUc -3'
miRNA:   3'- -UGUagaaGGCGCAGCCGC-CGCuuCUG- -5'
27678 3' -56.2 NC_005882.1 + 20450 0.66 0.549944
Target:  5'- gGCAgcgaUCCG-GUCGGCGucauCGAAGACg -3'
miRNA:   3'- -UGUaga-AGGCgCAGCCGCc---GCUUCUG- -5'
27678 3' -56.2 NC_005882.1 + 23445 0.66 0.528092
Target:  5'- gGCGUCgagcggCCGCuGUCGGCGaUGAucGACg -3'
miRNA:   3'- -UGUAGaa----GGCG-CAGCCGCcGCUu-CUG- -5'
27678 3' -56.2 NC_005882.1 + 13084 0.66 0.517286
Target:  5'- gAUGUCgcggCUGCGgCGGCuGGCGucGACg -3'
miRNA:   3'- -UGUAGaa--GGCGCaGCCG-CCGCuuCUG- -5'
27678 3' -56.2 NC_005882.1 + 12958 0.67 0.464721
Target:  5'- cACAcCaUCgGCGcCGGCGGCGGcguuccacacgcGGACa -3'
miRNA:   3'- -UGUaGaAGgCGCaGCCGCCGCU------------UCUG- -5'
27678 3' -56.2 NC_005882.1 + 3266 0.68 0.444482
Target:  5'- uCGUCggccggCCGcCGUCGcGCGGCG-AGAUc -3'
miRNA:   3'- uGUAGaa----GGC-GCAGC-CGCCGCuUCUG- -5'
27678 3' -56.2 NC_005882.1 + 14009 0.68 0.424746
Target:  5'- uGCggCUUCCGUGcUCGccuugaucGCGGCGAAGcgGCg -3'
miRNA:   3'- -UGuaGAAGGCGC-AGC--------CGCCGCUUC--UG- -5'
27678 3' -56.2 NC_005882.1 + 21811 0.68 0.405543
Target:  5'- aACAgg-UCCGCGUCGaacUGGCGAcGGCg -3'
miRNA:   3'- -UGUagaAGGCGCAGCc--GCCGCUuCUG- -5'
27678 3' -56.2 NC_005882.1 + 22279 0.69 0.386896
Target:  5'- gGCGUCacgCUGCa--GGaCGGCGAAGACg -3'
miRNA:   3'- -UGUAGaa-GGCGcagCC-GCCGCUUCUG- -5'
27678 3' -56.2 NC_005882.1 + 14406 0.69 0.377786
Target:  5'- -aGUCgcgCCGCGUUGGCuuguccuggGGCGAAG-Ca -3'
miRNA:   3'- ugUAGaa-GGCGCAGCCG---------CCGCUUCuG- -5'
27678 3' -56.2 NC_005882.1 + 31569 0.69 0.360004
Target:  5'- aGCGUCacgUCgGUGUCGGUcGCGAacgAGACa -3'
miRNA:   3'- -UGUAGa--AGgCGCAGCCGcCGCU---UCUG- -5'
27678 3' -56.2 NC_005882.1 + 18291 0.74 0.187483
Target:  5'- cACA---UgCGCGUCGGCGGCaaGAAGGCg -3'
miRNA:   3'- -UGUagaAgGCGCAGCCGCCG--CUUCUG- -5'
27678 3' -56.2 NC_005882.1 + 10683 0.75 0.15868
Target:  5'- uUAUC--CCGUGUCGGCagcGGCGGAGGCg -3'
miRNA:   3'- uGUAGaaGGCGCAGCCG---CCGCUUCUG- -5'
27678 3' -56.2 NC_005882.1 + 24394 1.1 0.000428
Target:  5'- aACAUCUUCCGCGUCGGCGGCGAAGACa -3'
miRNA:   3'- -UGUAGAAGGCGCAGCCGCCGCUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.