miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27678 5' -57.4 NC_005882.1 + 16043 0.66 0.492963
Target:  5'- cGACgugcgcgUCCGCGCgCAGC-UCG-CGGUa -3'
miRNA:   3'- aCUGa------AGGCGCG-GUUGuAGCcGCCGa -5'
27678 5' -57.4 NC_005882.1 + 31932 0.66 0.491912
Target:  5'- cGAUUUCCagcucguacGCGaCAaccugaccgacgaGCGUCGGCGGCc -3'
miRNA:   3'- aCUGAAGG---------CGCgGU-------------UGUAGCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 629 0.66 0.482503
Target:  5'- cGcCUggUCgGCGCCGAUGUCGGCcaGCUc -3'
miRNA:   3'- aCuGA--AGgCGCGGUUGUAGCCGc-CGA- -5'
27678 5' -57.4 NC_005882.1 + 10688 0.66 0.482503
Target:  5'- -uGCUguuaucCCGUGUCGGCAgcggcggaggCGGCGGCa -3'
miRNA:   3'- acUGAa-----GGCGCGGUUGUa---------GCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 23428 0.66 0.472153
Target:  5'- -aGCUcgUCgGCGUCAcggGCGUCGaGCGGCc -3'
miRNA:   3'- acUGA--AGgCGCGGU---UGUAGC-CGCCGa -5'
27678 5' -57.4 NC_005882.1 + 29025 0.66 0.461915
Target:  5'- cGACa-UCGCGCCcuacguGCuGUCGGUGGCg -3'
miRNA:   3'- aCUGaaGGCGCGGu-----UG-UAGCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 24381 0.66 0.451796
Target:  5'- gGACUaUCUG-GCgAacaucuuccGCGUCGGCGGCg -3'
miRNA:   3'- aCUGA-AGGCgCGgU---------UGUAGCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 18995 0.66 0.451796
Target:  5'- cGACaa-CGCGCCGGCGU-GG-GGCUg -3'
miRNA:   3'- aCUGaagGCGCGGUUGUAgCCgCCGA- -5'
27678 5' -57.4 NC_005882.1 + 13004 0.66 0.451796
Target:  5'- cGGCgcgggCCG-GCgCAACAgcucCGGCGGCa -3'
miRNA:   3'- aCUGaa---GGCgCG-GUUGUa---GCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 16756 0.66 0.441799
Target:  5'- gGACgcgCGCGUCGACGucgccUCGGUGGUUu -3'
miRNA:   3'- aCUGaagGCGCGGUUGU-----AGCCGCCGA- -5'
27678 5' -57.4 NC_005882.1 + 32578 0.67 0.435861
Target:  5'- aGGCUUUgGCGaaGuugagcuugucgaggGCAUCGGUGGCg -3'
miRNA:   3'- aCUGAAGgCGCggU---------------UGUAGCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 25509 0.67 0.431928
Target:  5'- cGGC--CCGCGCCAucGCGUCccccaGGCGGgUa -3'
miRNA:   3'- aCUGaaGGCGCGGU--UGUAG-----CCGCCgA- -5'
27678 5' -57.4 NC_005882.1 + 282 0.67 0.431928
Target:  5'- gGACcgaUUCUGCGgCAuuACAUCGaCGGCUg -3'
miRNA:   3'- aCUG---AAGGCGCgGU--UGUAGCcGCCGA- -5'
27678 5' -57.4 NC_005882.1 + 32185 0.67 0.422188
Target:  5'- gGACgauaUCGCGCCc-CAggcCGGCGGCa -3'
miRNA:   3'- aCUGaa--GGCGCGGuuGUa--GCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 12577 0.67 0.422188
Target:  5'- cGGCUggCGCGgUcGCuuucuUCGGCGGCUa -3'
miRNA:   3'- aCUGAagGCGCgGuUGu----AGCCGCCGA- -5'
27678 5' -57.4 NC_005882.1 + 14278 0.67 0.412581
Target:  5'- uUGACgaCCuuGUCGACGgccgCGGCGGCc -3'
miRNA:   3'- -ACUGaaGGcgCGGUUGUa---GCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 31043 0.67 0.393778
Target:  5'- cGACU--CGCGCaCAACAUgCGGCguGGCg -3'
miRNA:   3'- aCUGAagGCGCG-GUUGUA-GCCG--CCGa -5'
27678 5' -57.4 NC_005882.1 + 9550 0.67 0.384587
Target:  5'- cGGCcgCCagcGCGCCAAUcgCaGCGGCUu -3'
miRNA:   3'- aCUGaaGG---CGCGGUUGuaGcCGCCGA- -5'
27678 5' -57.4 NC_005882.1 + 20935 0.67 0.384587
Target:  5'- cGGCgUCCGCGCCgAGCAgguaCGGcCGGa- -3'
miRNA:   3'- aCUGaAGGCGCGG-UUGUa---GCC-GCCga -5'
27678 5' -57.4 NC_005882.1 + 12517 0.68 0.35788
Target:  5'- -uGCUUUCGCGCgGcCAgugugucgCGGCGGCg -3'
miRNA:   3'- acUGAAGGCGCGgUuGUa-------GCCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.