miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27678 5' -57.4 NC_005882.1 + 282 0.67 0.431928
Target:  5'- gGACcgaUUCUGCGgCAuuACAUCGaCGGCUg -3'
miRNA:   3'- aCUG---AAGGCGCgGU--UGUAGCcGCCGA- -5'
27678 5' -57.4 NC_005882.1 + 469 0.76 0.106098
Target:  5'- cGaACUUCCGUGCCAGC-UCGGCauGGUUg -3'
miRNA:   3'- aC-UGAAGGCGCGGUUGuAGCCG--CCGA- -5'
27678 5' -57.4 NC_005882.1 + 629 0.66 0.482503
Target:  5'- cGcCUggUCgGCGCCGAUGUCGGCcaGCUc -3'
miRNA:   3'- aCuGA--AGgCGCGGUUGUAGCCGc-CGA- -5'
27678 5' -57.4 NC_005882.1 + 3270 0.71 0.219665
Target:  5'- cGACgugCUGCGCgAGCGUgCGGgCGGCg -3'
miRNA:   3'- aCUGaa-GGCGCGgUUGUA-GCC-GCCGa -5'
27678 5' -57.4 NC_005882.1 + 3969 0.68 0.344178
Target:  5'- gGGCUUCCGgGCugcucuugaccucucCAGCGgggccaCGGCGGCc -3'
miRNA:   3'- aCUGAAGGCgCG---------------GUUGUa-----GCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 4909 0.73 0.171283
Target:  5'- cGugUUCCGUGCCGcggcgcggcagguACGUCGGaagauCGGCUu -3'
miRNA:   3'- aCugAAGGCGCGGU-------------UGUAGCC-----GCCGA- -5'
27678 5' -57.4 NC_005882.1 + 6539 0.71 0.219665
Target:  5'- cGACUUCucaCGCGCCGcuaACugauUCGGgGGCUc -3'
miRNA:   3'- aCUGAAG---GCGCGGU---UGu---AGCCgCCGA- -5'
27678 5' -57.4 NC_005882.1 + 6664 0.72 0.181526
Target:  5'- cGGCgugCUGCGCCAAgGUUucgaaGGCGGCa -3'
miRNA:   3'- aCUGaa-GGCGCGGUUgUAG-----CCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 9045 0.7 0.250935
Target:  5'- cGAUUgaagcUCCGCGCgGGCuucagCGGCGGUa -3'
miRNA:   3'- aCUGA-----AGGCGCGgUUGua---GCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 9550 0.67 0.384587
Target:  5'- cGGCcgCCagcGCGCCAAUcgCaGCGGCUu -3'
miRNA:   3'- aCUGaaGG---CGCGGUUGuaGcCGCCGA- -5'
27678 5' -57.4 NC_005882.1 + 10688 0.66 0.482503
Target:  5'- -uGCUguuaucCCGUGUCGGCAgcggcggaggCGGCGGCa -3'
miRNA:   3'- acUGAa-----GGCGCGGUUGUa---------GCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 11994 0.68 0.35788
Target:  5'- -cACUUgCGCgGCCAcggGCG-CGGCGGCg -3'
miRNA:   3'- acUGAAgGCG-CGGU---UGUaGCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 12517 0.68 0.35788
Target:  5'- -uGCUUUCGCGCgGcCAgugugucgCGGCGGCg -3'
miRNA:   3'- acUGAAGGCGCGgUuGUa-------GCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 12577 0.67 0.422188
Target:  5'- cGGCUggCGCGgUcGCuuucuUCGGCGGCUa -3'
miRNA:   3'- aCUGAagGCGCgGuUGu----AGCCGCCGA- -5'
27678 5' -57.4 NC_005882.1 + 13004 0.66 0.451796
Target:  5'- cGGCgcgggCCG-GCgCAACAgcucCGGCGGCa -3'
miRNA:   3'- aCUGaa---GGCgCG-GUUGUa---GCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 14007 0.7 0.285784
Target:  5'- cGGCUUCCGUGCUcGCcuugAUCG-CGGCg -3'
miRNA:   3'- aCUGAAGGCGCGGuUG----UAGCcGCCGa -5'
27678 5' -57.4 NC_005882.1 + 14278 0.67 0.412581
Target:  5'- uUGACgaCCuuGUCGACGgccgCGGCGGCc -3'
miRNA:   3'- -ACUGaaGGcgCGGUUGUa---GCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 15033 0.71 0.238007
Target:  5'- gGACUg-CGUGCCGaagaACAgCGGCGGCg -3'
miRNA:   3'- aCUGAagGCGCGGU----UGUaGCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 15394 0.69 0.316329
Target:  5'- cGGCUcCCGCGCUu-CAcgGGCGGCg -3'
miRNA:   3'- aCUGAaGGCGCGGuuGUagCCGCCGa -5'
27678 5' -57.4 NC_005882.1 + 16043 0.66 0.492963
Target:  5'- cGACgugcgcgUCCGCGCgCAGC-UCG-CGGUa -3'
miRNA:   3'- aCUGa------AGGCGCG-GUUGuAGCcGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.