miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27679 3' -61.2 NC_005882.1 + 28591 0.66 0.349778
Target:  5'- cGCgCAGgaugcCGGCCGCCUCGGgaauCUGGuCg -3'
miRNA:   3'- cCG-GUCau---GCUGGCGGAGCC----GGCCuG- -5'
27679 3' -61.2 NC_005882.1 + 2752 0.66 0.341611
Target:  5'- cGCCAGcUACGucguAUUGCUUCGcGCCGGcCa -3'
miRNA:   3'- cCGGUC-AUGC----UGGCGGAGC-CGGCCuG- -5'
27679 3' -61.2 NC_005882.1 + 17330 0.66 0.325695
Target:  5'- aGCCgaGGU-CGACCGCUUCaGGCaUGGAg -3'
miRNA:   3'- cCGG--UCAuGCUGGCGGAG-CCG-GCCUg -5'
27679 3' -61.2 NC_005882.1 + 3170 0.66 0.317946
Target:  5'- aGGCaaacugACGAUUGCCUUGccGCUGGACa -3'
miRNA:   3'- -CCGguca--UGCUGGCGGAGC--CGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 16654 0.66 0.317946
Target:  5'- cGGCgaGGUAuCGAUUGCCUUGcUCGGGCa -3'
miRNA:   3'- -CCGg-UCAU-GCUGGCGGAGCcGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 3717 0.66 0.317946
Target:  5'- cGGUUcaAGUuCGGCCGUCUCGacaaGCCGGuCg -3'
miRNA:   3'- -CCGG--UCAuGCUGGCGGAGC----CGGCCuG- -5'
27679 3' -61.2 NC_005882.1 + 28247 0.66 0.302866
Target:  5'- cGGCC-GUACagcccaagguGCCGCCggCGGCCGcGCa -3'
miRNA:   3'- -CCGGuCAUGc---------UGGCGGa-GCCGGCcUG- -5'
27679 3' -61.2 NC_005882.1 + 35831 0.67 0.295535
Target:  5'- cGGUCAGcgucGCGAUCGCUgccuUCuGCCGGAa -3'
miRNA:   3'- -CCGGUCa---UGCUGGCGG----AGcCGGCCUg -5'
27679 3' -61.2 NC_005882.1 + 24072 0.67 0.281289
Target:  5'- cGGCaaGGU-CGAgCUGCCgggCGGCCuGGACa -3'
miRNA:   3'- -CCGg-UCAuGCU-GGCGGa--GCCGG-CCUG- -5'
27679 3' -61.2 NC_005882.1 + 6032 0.67 0.281289
Target:  5'- gGGCCGGUGCGAgCaGUUggUCGGgaUGGACg -3'
miRNA:   3'- -CCGGUCAUGCUgG-CGG--AGCCg-GCCUG- -5'
27679 3' -61.2 NC_005882.1 + 23243 0.67 0.281289
Target:  5'- cGGCgCAucgauGUacGCGAUCGCCcCGaGCUGGACg -3'
miRNA:   3'- -CCG-GU-----CA--UGCUGGCGGaGC-CGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 22703 0.67 0.281289
Target:  5'- gGGCCGaacUGCG-CCGCgUCGacGUCGGACa -3'
miRNA:   3'- -CCGGUc--AUGCuGGCGgAGC--CGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 35140 0.67 0.267593
Target:  5'- gGGUUAGgauCGACUGCCcauUCGuGCCGGcCg -3'
miRNA:   3'- -CCGGUCau-GCUGGCGG---AGC-CGGCCuG- -5'
27679 3' -61.2 NC_005882.1 + 12803 0.67 0.266922
Target:  5'- uGCCAGUgucACGAgccaauaCCGCC-CGgcGCCGGAUg -3'
miRNA:   3'- cCGGUCA---UGCU-------GGCGGaGC--CGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 31265 0.67 0.260949
Target:  5'- uGCCAGUGCG--CGCCUCGuaGUCGGcCa -3'
miRNA:   3'- cCGGUCAUGCugGCGGAGC--CGGCCuG- -5'
27679 3' -61.2 NC_005882.1 + 22894 0.68 0.241824
Target:  5'- -uUCAGcACGAgauUCGCCgCGGCCGGAUg -3'
miRNA:   3'- ccGGUCaUGCU---GGCGGaGCCGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 26704 0.68 0.235713
Target:  5'- cGCgCAGUucGCGGCCGCCcauccCGGCCuGAUc -3'
miRNA:   3'- cCG-GUCA--UGCUGGCGGa----GCCGGcCUG- -5'
27679 3' -61.2 NC_005882.1 + 27591 0.68 0.229733
Target:  5'- cGCCGGcaugGCGACgcagGCCgCGGCCGcGGCg -3'
miRNA:   3'- cCGGUCa---UGCUGg---CGGaGCCGGC-CUG- -5'
27679 3' -61.2 NC_005882.1 + 12527 0.68 0.229733
Target:  5'- cGGCCAGUGUGucGCgGCggCGGCCGGcGCu -3'
miRNA:   3'- -CCGGUCAUGC--UGgCGgaGCCGGCC-UG- -5'
27679 3' -61.2 NC_005882.1 + 4405 0.69 0.212557
Target:  5'- uGGCCcGU-CGuauCCGCCaagacaUCGGUCGGGCc -3'
miRNA:   3'- -CCGGuCAuGCu--GGCGG------AGCCGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.