miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27679 3' -61.2 NC_005882.1 + 25508 1.11 0.00011
Target:  5'- cGGCCAGUACGACCGCCUCGGCCGGACa -3'
miRNA:   3'- -CCGGUCAUGCUGGCGGAGCCGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 17883 0.79 0.035695
Target:  5'- cGGCCG--GCGACCGCCUCGGCaC-GACg -3'
miRNA:   3'- -CCGGUcaUGCUGGCGGAGCCG-GcCUG- -5'
27679 3' -61.2 NC_005882.1 + 16006 0.76 0.065204
Target:  5'- cGGCgGGUGCGugCGCCgccgcaaggCGGCCGuGAa -3'
miRNA:   3'- -CCGgUCAUGCugGCGGa--------GCCGGC-CUg -5'
27679 3' -61.2 NC_005882.1 + 12022 0.76 0.067084
Target:  5'- cGGCgCGGUACGccAgCGCCUCGG-CGGGCa -3'
miRNA:   3'- -CCG-GUCAUGC--UgGCGGAGCCgGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 402 0.74 0.086521
Target:  5'- uGGCgAGcgGCGAUCuCCUCGcGCCGGACc -3'
miRNA:   3'- -CCGgUCa-UGCUGGcGGAGC-CGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 31540 0.72 0.127703
Target:  5'- cGGCCAGUuguCGAUCGacgUGGCCGcGACg -3'
miRNA:   3'- -CCGGUCAu--GCUGGCggaGCCGGC-CUG- -5'
27679 3' -61.2 NC_005882.1 + 25121 0.72 0.131255
Target:  5'- aGGCCAucGUguggcuuuGCGGCCGgCUCGggcGCCGGGCc -3'
miRNA:   3'- -CCGGU--CA--------UGCUGGCgGAGC---CGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 12287 0.71 0.150414
Target:  5'- cGGCCuauaACGGCgGCCUgGGCUGGGu -3'
miRNA:   3'- -CCGGuca-UGCUGgCGGAgCCGGCCUg -5'
27679 3' -61.2 NC_005882.1 + 30073 0.71 0.15454
Target:  5'- --gCGGUGCcGCCGCCUuugcCGGCCuGGACg -3'
miRNA:   3'- ccgGUCAUGcUGGCGGA----GCCGG-CCUG- -5'
27679 3' -61.2 NC_005882.1 + 26800 0.71 0.15454
Target:  5'- cGGCCGuUGCGaagccgaccacGCCGCggaUCGGCCGGGa -3'
miRNA:   3'- -CCGGUcAUGC-----------UGGCGg--AGCCGGCCUg -5'
27679 3' -61.2 NC_005882.1 + 14202 0.71 0.158768
Target:  5'- cGCgCGGaaGCGGCCGCCgCGGCCGucGACa -3'
miRNA:   3'- cCG-GUCa-UGCUGGCGGaGCCGGC--CUG- -5'
27679 3' -61.2 NC_005882.1 + 28323 0.7 0.1631
Target:  5'- cGCCuGcGCGGCCGCCggCGGCaccuuGGGCu -3'
miRNA:   3'- cCGGuCaUGCUGGCGGa-GCCGg----CCUG- -5'
27679 3' -61.2 NC_005882.1 + 27132 0.7 0.172083
Target:  5'- cGGCCAGcuCGugaACgGCCUgaugcUGGCCGGGCg -3'
miRNA:   3'- -CCGGUCauGC---UGgCGGA-----GCCGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 21705 0.7 0.186387
Target:  5'- cGGCCcg-GCGA-CGCC-CGaGCCGGGCg -3'
miRNA:   3'- -CCGGucaUGCUgGCGGaGC-CGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 12232 0.69 0.191383
Target:  5'- aGGaCgGGUugaACGGCUGCgccucgcccagCUCGGCCGGAUa -3'
miRNA:   3'- -CC-GgUCA---UGCUGGCG-----------GAGCCGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 13728 0.69 0.196497
Target:  5'- cGCCGuagcgcGUGaGAUCGCCccaccagCGGCCGGACg -3'
miRNA:   3'- cCGGU------CAUgCUGGCGGa------GCCGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 12614 0.69 0.201729
Target:  5'- cGCCAGUGCgccGAUCGCCgcaGcGCCGGcCg -3'
miRNA:   3'- cCGGUCAUG---CUGGCGGag-C-CGGCCuG- -5'
27679 3' -61.2 NC_005882.1 + 26010 0.69 0.201729
Target:  5'- cGGCC--UACGGCgGCaagCUCGGCCGGu- -3'
miRNA:   3'- -CCGGucAUGCUGgCG---GAGCCGGCCug -5'
27679 3' -61.2 NC_005882.1 + 4405 0.69 0.212557
Target:  5'- uGGCCcGU-CGuauCCGCCaagacaUCGGUCGGGCc -3'
miRNA:   3'- -CCGGuCAuGCu--GGCGG------AGCCGGCCUG- -5'
27679 3' -61.2 NC_005882.1 + 27591 0.68 0.229733
Target:  5'- cGCCGGcaugGCGACgcagGCCgCGGCCGcGGCg -3'
miRNA:   3'- cCGGUCa---UGCUGg---CGGaGCCGGC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.