miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2768 3' -63.1 NC_001491.2 + 95446 0.66 0.584313
Target:  5'- uGCGcCCCGCCac-GAGuCUGUCCAUCAg -3'
miRNA:   3'- -UGCaGGGCGGagaCUC-GGCGGGUGGU- -5'
2768 3' -63.1 NC_001491.2 + 60146 0.66 0.584313
Target:  5'- cGCGcCUgGCCUCgagggcccugaGAGCCGCuuCCGCCGc -3'
miRNA:   3'- -UGCaGGgCGGAGa----------CUCGGCG--GGUGGU- -5'
2768 3' -63.1 NC_001491.2 + 116975 0.67 0.507976
Target:  5'- cGCGg-CCGCCUCgguggccaUGAGCCG-CCGCUAc -3'
miRNA:   3'- -UGCagGGCGGAG--------ACUCGGCgGGUGGU- -5'
2768 3' -63.1 NC_001491.2 + 147804 0.67 0.507976
Target:  5'- gGCGgcccUCCGUCUCagcGGGCCGCuggCCGCCAg -3'
miRNA:   3'- -UGCa---GGGCGGAGa--CUCGGCG---GGUGGU- -5'
2768 3' -63.1 NC_001491.2 + 141770 0.67 0.497787
Target:  5'- gACGgaUCCUGCCgcaUGGcccagcgggggacGCCGUCCACCAg -3'
miRNA:   3'- -UGC--AGGGCGGag-ACU-------------CGGCGGGUGGU- -5'
2768 3' -63.1 NC_001491.2 + 68883 0.68 0.436175
Target:  5'- uGCGgCCCGCCauaGAGCCGCCgCAgCGg -3'
miRNA:   3'- -UGCaGGGCGGagaCUCGGCGG-GUgGU- -5'
2768 3' -63.1 NC_001491.2 + 118754 0.69 0.386338
Target:  5'- aGCGgcgCCCGUCgUCcGAG-CGCCCGCCGc -3'
miRNA:   3'- -UGCa--GGGCGG-AGaCUCgGCGGGUGGU- -5'
2768 3' -63.1 NC_001491.2 + 52188 0.7 0.362868
Target:  5'- uCGUUaugaCUGCUgagCUGAGCCGCUCACCc -3'
miRNA:   3'- uGCAG----GGCGGa--GACUCGGCGGGUGGu -5'
2768 3' -63.1 NC_001491.2 + 79935 0.7 0.34778
Target:  5'- cGCGUCgUGUCcCUG-GCCGCCCACg- -3'
miRNA:   3'- -UGCAGgGCGGaGACuCGGCGGGUGgu -5'
2768 3' -63.1 NC_001491.2 + 125494 0.7 0.347038
Target:  5'- cCGcCCCGCCcCgggGAcccgcgggcgcccGCCGCCCGCCGg -3'
miRNA:   3'- uGCaGGGCGGaGa--CU-------------CGGCGGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.