miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2768 5' -58.1 NC_001491.2 + 150144 0.66 0.804426
Target:  5'- uGACGucaccggaaGGGGCGUGGCCGGA---AGCGg -3'
miRNA:   3'- -CUGC---------CCCUGUACCGGUCUcagUCGUa -5'
2768 5' -58.1 NC_001491.2 + 30453 0.66 0.795435
Target:  5'- uGCGcGGGAUGcUGGCCAGAGacgaaaccguUCGGUGUg -3'
miRNA:   3'- cUGC-CCCUGU-ACCGGUCUC----------AGUCGUA- -5'
2768 5' -58.1 NC_001491.2 + 149166 0.66 0.767608
Target:  5'- gGGCGGGG-CggGGuUCAGcGUCAGCGg -3'
miRNA:   3'- -CUGCCCCuGuaCC-GGUCuCAGUCGUa -5'
2768 5' -58.1 NC_001491.2 + 1586 0.66 0.767608
Target:  5'- cGACGGGGcgcaGCAUacaGGCCGGcuauUCAGCGg -3'
miRNA:   3'- -CUGCCCC----UGUA---CCGGUCuc--AGUCGUa -5'
2768 5' -58.1 NC_001491.2 + 52343 0.67 0.708925
Target:  5'- cGACGaGGAUGUGGCCAcGG-CGGCAg -3'
miRNA:   3'- -CUGCcCCUGUACCGGUcUCaGUCGUa -5'
2768 5' -58.1 NC_001491.2 + 117377 0.67 0.708925
Target:  5'- -cCGGGGACcccUGGCCcGGGUCGGa-- -3'
miRNA:   3'- cuGCCCCUGu--ACCGGuCUCAGUCgua -5'
2768 5' -58.1 NC_001491.2 + 46488 0.7 0.545889
Target:  5'- --gGGGGACA-GGuCCAGAcuGUCGGCGUc -3'
miRNA:   3'- cugCCCCUGUaCC-GGUCU--CAGUCGUA- -5'
2768 5' -58.1 NC_001491.2 + 147096 0.7 0.545889
Target:  5'- -cCGGGGACGgugGGCCAcaGGGgCGGCAg -3'
miRNA:   3'- cuGCCCCUGUa--CCGGU--CUCaGUCGUa -5'
2768 5' -58.1 NC_001491.2 + 142998 0.71 0.516143
Target:  5'- --aGGGGGCGUGGCUuGAGaCAGCu- -3'
miRNA:   3'- cugCCCCUGUACCGGuCUCaGUCGua -5'
2768 5' -58.1 NC_001491.2 + 45120 0.72 0.422509
Target:  5'- cGGCGGGGGCcgccgcagauuUGGCCGGGGccgCGGCGg -3'
miRNA:   3'- -CUGCCCCUGu----------ACCGGUCUCa--GUCGUa -5'
2768 5' -58.1 NC_001491.2 + 45186 0.72 0.422509
Target:  5'- cGGCGGGGGCcgccgcagauuUGGCCGGGGccgCGGCGg -3'
miRNA:   3'- -CUGCCCCUGu----------ACCGGUCUCa--GUCGUa -5'
2768 5' -58.1 NC_001491.2 + 45252 0.72 0.422509
Target:  5'- cGGCGGGGGCcgccgcagauuUGGCCGGGGccgCGGCGg -3'
miRNA:   3'- -CUGCCCCUGu----------ACCGGUCUCa--GUCGUa -5'
2768 5' -58.1 NC_001491.2 + 124899 0.78 0.206259
Target:  5'- cGAgGGGGugGUGGCCGGAGaggugcUCAGCu- -3'
miRNA:   3'- -CUgCCCCugUACCGGUCUC------AGUCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.