miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27680 3' -50.6 NC_005882.1 + 5834 0.66 0.877325
Target:  5'- gUCAUGggUGCgGAaucggGcGAGACCUCu -3'
miRNA:   3'- -GGUGCuuGCGgCUgua--CuUUCUGGAG- -5'
27680 3' -50.6 NC_005882.1 + 20666 0.66 0.869065
Target:  5'- gCCAUcuAUGCCGACGacAAGGACCg- -3'
miRNA:   3'- -GGUGcuUGCGGCUGUacUUUCUGGag -5'
27680 3' -50.6 NC_005882.1 + 23566 0.66 0.869065
Target:  5'- aCCGC--ACGgCGGCAUGGccGACCg- -3'
miRNA:   3'- -GGUGcuUGCgGCUGUACUuuCUGGag -5'
27680 3' -50.6 NC_005882.1 + 4806 0.66 0.851733
Target:  5'- uCCGCGcuccagucGACGCCGGCAgcuucGAcagcGGCCUUg -3'
miRNA:   3'- -GGUGC--------UUGCGGCUGUa----CUuu--CUGGAG- -5'
27680 3' -50.6 NC_005882.1 + 17674 0.66 0.842679
Target:  5'- -gGCGAACGUCGAC--GAucGGCCg- -3'
miRNA:   3'- ggUGCUUGCGGCUGuaCUuuCUGGag -5'
27680 3' -50.6 NC_005882.1 + 24129 0.67 0.833378
Target:  5'- cUCGCucuACGCCGACGUGGcgAAGGCg-- -3'
miRNA:   3'- -GGUGcu-UGCGGCUGUACU--UUCUGgag -5'
27680 3' -50.6 NC_005882.1 + 786 0.67 0.814082
Target:  5'- aCgACGGAgGCCG-UAUGAAGGACg-- -3'
miRNA:   3'- -GgUGCUUgCGGCuGUACUUUCUGgag -5'
27680 3' -50.6 NC_005882.1 + 26148 0.67 0.814082
Target:  5'- gCCGCGAagGCGCCGGCAgugGcgacGAAG-CCg- -3'
miRNA:   3'- -GGUGCU--UGCGGCUGUa--C----UUUCuGGag -5'
27680 3' -50.6 NC_005882.1 + 18832 0.67 0.813095
Target:  5'- uUACGAuuGCGCCGGCGUGAuacgcgcgaugcaGGGAgCg- -3'
miRNA:   3'- gGUGCU--UGCGGCUGUACU-------------UUCUgGag -5'
27680 3' -50.6 NC_005882.1 + 31960 0.67 0.793937
Target:  5'- aCCgACGAGCGUCGGCGgccgcuGACCg- -3'
miRNA:   3'- -GG-UGCUUGCGGCUGUacuuu-CUGGag -5'
27680 3' -50.6 NC_005882.1 + 8855 0.68 0.770915
Target:  5'- gCCACc-ACGUCGACAgcccggucaucgGcGAGACCUCg -3'
miRNA:   3'- -GGUGcuUGCGGCUGUa-----------CuUUCUGGAG- -5'
27680 3' -50.6 NC_005882.1 + 20067 0.68 0.762345
Target:  5'- aCACGAACGCCGAauucAucGGCCa- -3'
miRNA:   3'- gGUGCUUGCGGCUguacUuuCUGGag -5'
27680 3' -50.6 NC_005882.1 + 30206 0.68 0.762345
Target:  5'- uUCGCGcGCGUaCGGC-UGAccGACCUCg -3'
miRNA:   3'- -GGUGCuUGCG-GCUGuACUuuCUGGAG- -5'
27680 3' -50.6 NC_005882.1 + 27822 0.69 0.718206
Target:  5'- gCGCGAGCGCCGcGCGUacAGGAgCUg -3'
miRNA:   3'- gGUGCUUGCGGC-UGUAcuUUCUgGAg -5'
27680 3' -50.6 NC_005882.1 + 25371 0.69 0.718206
Target:  5'- gCCGCGcuuuccggcacGCGCaCGACGcUGAAuGGCCUCg -3'
miRNA:   3'- -GGUGCu----------UGCG-GCUGU-ACUUuCUGGAG- -5'
27680 3' -50.6 NC_005882.1 + 15274 0.69 0.718206
Target:  5'- -aGCGGGCGUCGACcgGGAGcGCCg- -3'
miRNA:   3'- ggUGCUUGCGGCUGuaCUUUcUGGag -5'
27680 3' -50.6 NC_005882.1 + 2175 0.69 0.706901
Target:  5'- -gGCGuuuGCGaCCGACAaGGAAGGCCa- -3'
miRNA:   3'- ggUGCu--UGC-GGCUGUaCUUUCUGGag -5'
27680 3' -50.6 NC_005882.1 + 21347 0.69 0.695514
Target:  5'- gCACGcuCGCCGACcUGAAGcuGGCCg- -3'
miRNA:   3'- gGUGCuuGCGGCUGuACUUU--CUGGag -5'
27680 3' -50.6 NC_005882.1 + 28357 0.69 0.695514
Target:  5'- gCGCGGuggccacCGCCGAUGUGAcgcugGAGACCg- -3'
miRNA:   3'- gGUGCUu------GCGGCUGUACU-----UUCUGGag -5'
27680 3' -50.6 NC_005882.1 + 16152 0.7 0.67255
Target:  5'- uCCGCGAagACGUCGGC--GAucGACUUCg -3'
miRNA:   3'- -GGUGCU--UGCGGCUGuaCUuuCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.