miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27681 5' -57.9 NC_005882.1 + 4816 0.66 0.447253
Target:  5'- aGUCGaCGCCggcAGCUUCGAcAG-CGGCCu -3'
miRNA:   3'- -UAGUaGCGG---UCGGAGCU-UCaGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 216 0.66 0.447253
Target:  5'- cUCcUCGCgAGCCUUGccuUCGGCCu -3'
miRNA:   3'- uAGuAGCGgUCGGAGCuucAGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 19273 0.66 0.417882
Target:  5'- -aCGUCGCgCAGgcCCUUGAGGgccggCGGCUGc -3'
miRNA:   3'- uaGUAGCG-GUC--GGAGCUUCa----GCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 11849 0.66 0.417882
Target:  5'- gAUCGUCcUCGGCgUCGuAGUCGGCg- -3'
miRNA:   3'- -UAGUAGcGGUCGgAGCuUCAGCCGgc -5'
27681 5' -57.9 NC_005882.1 + 25688 0.67 0.408355
Target:  5'- -gCAggcCGCCAcCUUCGAAGcCGGCCu -3'
miRNA:   3'- uaGUa--GCGGUcGGAGCUUCaGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 14381 0.67 0.408355
Target:  5'- -aCGUCGCCcgucaaGGUCUgcgaGAAGUCGcGCCGc -3'
miRNA:   3'- uaGUAGCGG------UCGGAg---CUUCAGC-CGGC- -5'
27681 5' -57.9 NC_005882.1 + 17854 0.67 0.408355
Target:  5'- gAUCAUCGUgcgaGGCaucaaggUCGAGG-CGGCCGg -3'
miRNA:   3'- -UAGUAGCGg---UCGg------AGCUUCaGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 29376 0.67 0.398965
Target:  5'- gAUCGUCGCCAGCguggugugCUCGuacgcuUUGGCCu -3'
miRNA:   3'- -UAGUAGCGGUCG--------GAGCuuc---AGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 29833 0.67 0.389715
Target:  5'- uUCGUCuGCagcguuGCCUUGGAGcCGGCCc -3'
miRNA:   3'- uAGUAG-CGgu----CGGAGCUUCaGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 6624 0.67 0.389715
Target:  5'- ----aCGCCAGCCaUGAAGUCGucgugcggcgcGCCGu -3'
miRNA:   3'- uaguaGCGGUCGGaGCUUCAGC-----------CGGC- -5'
27681 5' -57.9 NC_005882.1 + 29262 0.67 0.37164
Target:  5'- aAUC-UCGUCGaUCUCGAAG-CGGCCGc -3'
miRNA:   3'- -UAGuAGCGGUcGGAGCUUCaGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 18233 0.67 0.37164
Target:  5'- cAUCG-CGCCAGCCUUcu-GaUGGCCGg -3'
miRNA:   3'- -UAGUaGCGGUCGGAGcuuCaGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 26212 0.68 0.354146
Target:  5'- uUCGUCGCCAcuGCCggCGccuucgCGGCCGa -3'
miRNA:   3'- uAGUAGCGGU--CGGa-GCuuca--GCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 7242 0.68 0.354146
Target:  5'- cGUCGUaguguggaaGCguGCCUgGAGGUUGGUCGu -3'
miRNA:   3'- -UAGUAg--------CGguCGGAgCUUCAGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 20503 0.68 0.351572
Target:  5'- gAUCGgcCGCCGGCCgaacacgauggugaUCGGugcGUCGGCCu -3'
miRNA:   3'- -UAGUa-GCGGUCGG--------------AGCUu--CAGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 1683 0.68 0.33724
Target:  5'- -gCGUCGaaAGCCcCGAAGUUcaaGGCCGg -3'
miRNA:   3'- uaGUAGCggUCGGaGCUUCAG---CCGGC- -5'
27681 5' -57.9 NC_005882.1 + 11357 0.68 0.313
Target:  5'- cUgGUCGCCAGUCacgUCGAGGaucUUGGCCu -3'
miRNA:   3'- uAgUAGCGGUCGG---AGCUUC---AGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 19019 0.69 0.297586
Target:  5'- --gGUCGCUucucUCUCGgcGUCGGCCGg -3'
miRNA:   3'- uagUAGCGGuc--GGAGCuuCAGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 15315 0.7 0.261646
Target:  5'- cGUCAggUCGCCAGuCCgucCGAAGUCcucGCCGu -3'
miRNA:   3'- -UAGU--AGCGGUC-GGa--GCUUCAGc--CGGC- -5'
27681 5' -57.9 NC_005882.1 + 12318 0.7 0.254896
Target:  5'- cGUCAUCGCCAuGCgCUCGcaugcacCGGCCGc -3'
miRNA:   3'- -UAGUAGCGGU-CG-GAGCuuca---GCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.