miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27681 5' -57.9 NC_005882.1 + 26125 1.06 0.000506
Target:  5'- gAUCAUCGCCAGCCUCGAAGUCGGCCGc -3'
miRNA:   3'- -UAGUAGCGGUCGGAGCUUCAGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 31270 0.74 0.128374
Target:  5'- cGUC-UUGCCAgugcgcGCCUCGuAGUCGGCCa -3'
miRNA:   3'- -UAGuAGCGGU------CGGAGCuUCAGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 31532 0.72 0.169991
Target:  5'- cUCGUCGCCGGCCaguugucgaUCGAcGU-GGCCGc -3'
miRNA:   3'- uAGUAGCGGUCGG---------AGCUuCAgCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 25752 0.72 0.195047
Target:  5'- -gCAg-GCCGGCUUCGAAGguggCGGCCu -3'
miRNA:   3'- uaGUagCGGUCGGAGCUUCa---GCCGGc -5'
27681 5' -57.9 NC_005882.1 + 11661 0.7 0.248289
Target:  5'- aGUC-UCGUCAGCCUCG----CGGCCGu -3'
miRNA:   3'- -UAGuAGCGGUCGGAGCuucaGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 12318 0.7 0.254896
Target:  5'- cGUCAUCGCCAuGCgCUCGcaugcacCGGCCGc -3'
miRNA:   3'- -UAGUAGCGGU-CG-GAGCuuca---GCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 15315 0.7 0.261646
Target:  5'- cGUCAggUCGCCAGuCCgucCGAAGUCcucGCCGu -3'
miRNA:   3'- -UAGU--AGCGGUC-GGa--GCUUCAGc--CGGC- -5'
27681 5' -57.9 NC_005882.1 + 19019 0.69 0.297586
Target:  5'- --gGUCGCUucucUCUCGgcGUCGGCCGg -3'
miRNA:   3'- uagUAGCGGuc--GGAGCuuCAGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 11357 0.68 0.313
Target:  5'- cUgGUCGCCAGUCacgUCGAGGaucUUGGCCu -3'
miRNA:   3'- uAgUAGCGGUCGG---AGCUUC---AGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 1683 0.68 0.33724
Target:  5'- -gCGUCGaaAGCCcCGAAGUUcaaGGCCGg -3'
miRNA:   3'- uaGUAGCggUCGGaGCUUCAG---CCGGC- -5'
27681 5' -57.9 NC_005882.1 + 20503 0.68 0.351572
Target:  5'- gAUCGgcCGCCGGCCgaacacgauggugaUCGGugcGUCGGCCu -3'
miRNA:   3'- -UAGUa-GCGGUCGG--------------AGCUu--CAGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 7242 0.68 0.354146
Target:  5'- cGUCGUaguguggaaGCguGCCUgGAGGUUGGUCGu -3'
miRNA:   3'- -UAGUAg--------CGguCGGAgCUUCAGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 26212 0.68 0.354146
Target:  5'- uUCGUCGCCAcuGCCggCGccuucgCGGCCGa -3'
miRNA:   3'- uAGUAGCGGU--CGGa-GCuuca--GCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 29262 0.67 0.37164
Target:  5'- aAUC-UCGUCGaUCUCGAAG-CGGCCGc -3'
miRNA:   3'- -UAGuAGCGGUcGGAGCUUCaGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 18233 0.67 0.37164
Target:  5'- cAUCG-CGCCAGCCUUcu-GaUGGCCGg -3'
miRNA:   3'- -UAGUaGCGGUCGGAGcuuCaGCCGGC- -5'
27681 5' -57.9 NC_005882.1 + 6624 0.67 0.389715
Target:  5'- ----aCGCCAGCCaUGAAGUCGucgugcggcgcGCCGu -3'
miRNA:   3'- uaguaGCGGUCGGaGCUUCAGC-----------CGGC- -5'
27681 5' -57.9 NC_005882.1 + 29833 0.67 0.389715
Target:  5'- uUCGUCuGCagcguuGCCUUGGAGcCGGCCc -3'
miRNA:   3'- uAGUAG-CGgu----CGGAGCUUCaGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 29376 0.67 0.398965
Target:  5'- gAUCGUCGCCAGCguggugugCUCGuacgcuUUGGCCu -3'
miRNA:   3'- -UAGUAGCGGUCG--------GAGCuuc---AGCCGGc -5'
27681 5' -57.9 NC_005882.1 + 14381 0.67 0.408355
Target:  5'- -aCGUCGCCcgucaaGGUCUgcgaGAAGUCGcGCCGc -3'
miRNA:   3'- uaGUAGCGG------UCGGAg---CUUCAGC-CGGC- -5'
27681 5' -57.9 NC_005882.1 + 25688 0.67 0.408355
Target:  5'- -gCAggcCGCCAcCUUCGAAGcCGGCCu -3'
miRNA:   3'- uaGUa--GCGGUcGGAGCUUCaGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.