Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27681 | 5' | -57.9 | NC_005882.1 | + | 14381 | 0.67 | 0.408355 |
Target: 5'- -aCGUCGCCcgucaaGGUCUgcgaGAAGUCGcGCCGc -3' miRNA: 3'- uaGUAGCGG------UCGGAg---CUUCAGC-CGGC- -5' |
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27681 | 5' | -57.9 | NC_005882.1 | + | 11849 | 0.66 | 0.417882 |
Target: 5'- gAUCGUCcUCGGCgUCGuAGUCGGCg- -3' miRNA: 3'- -UAGUAGcGGUCGgAGCuUCAGCCGgc -5' |
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27681 | 5' | -57.9 | NC_005882.1 | + | 19273 | 0.66 | 0.417882 |
Target: 5'- -aCGUCGCgCAGgcCCUUGAGGgccggCGGCUGc -3' miRNA: 3'- uaGUAGCG-GUC--GGAGCUUCa----GCCGGC- -5' |
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27681 | 5' | -57.9 | NC_005882.1 | + | 4816 | 0.66 | 0.447253 |
Target: 5'- aGUCGaCGCCggcAGCUUCGAcAG-CGGCCu -3' miRNA: 3'- -UAGUaGCGG---UCGGAGCU-UCaGCCGGc -5' |
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27681 | 5' | -57.9 | NC_005882.1 | + | 216 | 0.66 | 0.447253 |
Target: 5'- cUCcUCGCgAGCCUUGccuUCGGCCu -3' miRNA: 3'- uAGuAGCGgUCGGAGCuucAGCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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