Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27682 | 3' | -56.4 | NC_005882.1 | + | 26230 | 1.09 | 0.000484 |
Target: 5'- cGACGCCUACAAGAAGGCCGGCGUCGAc -3' miRNA: 3'- -CUGCGGAUGUUCUUCCGGCCGCAGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 20788 | 0.66 | 0.549944 |
Target: 5'- cACGCUgcGCAAGaAAGGCaaucCGGuCGUCGAc -3' miRNA: 3'- cUGCGGa-UGUUC-UUCCG----GCC-GCAGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 24982 | 0.66 | 0.53898 |
Target: 5'- cGACGCCgcggaGCGGGAAaucaaGCgGcGCGUCGAc -3' miRNA: 3'- -CUGCGGa----UGUUCUUc----CGgC-CGCAGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 17208 | 0.66 | 0.517286 |
Target: 5'- gGACGCgCUGCAGGAAcGGCUugcccGCG-CGAu -3' miRNA: 3'- -CUGCG-GAUGUUCUU-CCGGc----CGCaGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 6259 | 0.66 | 0.50657 |
Target: 5'- cGCGUCaACGAGcuuuGaCCGGCGUCGAc -3' miRNA: 3'- cUGCGGaUGUUCuu--CcGGCCGCAGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 10397 | 0.67 | 0.47502 |
Target: 5'- cGACGCaagcacugACGAGccGGCCGGCGauUCa- -3' miRNA: 3'- -CUGCGga------UGUUCuuCCGGCCGC--AGcu -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 18170 | 0.68 | 0.405543 |
Target: 5'- --aGCCggcCAucAGAAGGCUGGCG-CGAu -3' miRNA: 3'- cugCGGau-GU--UCUUCCGGCCGCaGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 31681 | 0.68 | 0.396149 |
Target: 5'- gGACGgCUACGAGGAGGaaaCGGaCGaUCGu -3' miRNA: 3'- -CUGCgGAUGUUCUUCCg--GCC-GC-AGCu -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 23227 | 0.7 | 0.326226 |
Target: 5'- aGGCGCUgGCcGGGcgcGGGCCGGCGggcaCGAu -3' miRNA: 3'- -CUGCGGaUGuUCU---UCCGGCCGCa---GCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 16017 | 0.7 | 0.318158 |
Target: 5'- uGCGCCgccGCAAGgcGGCCGugaaaGCGcUCGAa -3' miRNA: 3'- cUGCGGa--UGUUCuuCCGGC-----CGC-AGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 2080 | 0.71 | 0.287392 |
Target: 5'- cGGCGCagcGCGAGcacgcGGCCGGUGUUGAu -3' miRNA: 3'- -CUGCGga-UGUUCuu---CCGGCCGCAGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 13787 | 0.76 | 0.116077 |
Target: 5'- aACGCCUGCc-GAAGGCCGuGCG-CGAa -3' miRNA: 3'- cUGCGGAUGuuCUUCCGGC-CGCaGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 32042 | 0.77 | 0.112783 |
Target: 5'- uGACGCUgUACAAGGAuGCCGGCGcCGAc -3' miRNA: 3'- -CUGCGG-AUGUUCUUcCGGCCGCaGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 22736 | 0.67 | 0.454541 |
Target: 5'- aGCGCUUGCGGGAucgugaaGCCGGCGagcugCGGg -3' miRNA: 3'- cUGCGGAUGUUCUuc-----CGGCCGCa----GCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 12444 | 0.68 | 0.434549 |
Target: 5'- --gGCC-GCGuGccGGCCGGCGUUGAa -3' miRNA: 3'- cugCGGaUGUuCuuCCGGCCGCAGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 19275 | 0.68 | 0.434549 |
Target: 5'- uGACGUCgcGCAGgcccuuGAGGGCCGGCGgcugCGc -3' miRNA: 3'- -CUGCGGa-UGUU------CUUCCGGCCGCa---GCu -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 15496 | 0.68 | 0.396149 |
Target: 5'- cGACuUCUGCGAGGuauuGGCCGuugccccgcGCGUCGAa -3' miRNA: 3'- -CUGcGGAUGUUCUu---CCGGC---------CGCAGCU- -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 15257 | 0.68 | 0.396149 |
Target: 5'- aGCGCCgugaGC-AGcGGGCCGaGCGUCGc -3' miRNA: 3'- cUGCGGa---UGuUCuUCCGGC-CGCAGCu -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 27676 | 0.7 | 0.334446 |
Target: 5'- uGAUGCgCUGCAGGGAcgccgcggccgcGGCCuGCGUCGc -3' miRNA: 3'- -CUGCG-GAUGUUCUU------------CCGGcCGCAGCu -5' |
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27682 | 3' | -56.4 | NC_005882.1 | + | 4879 | 0.66 | 0.549944 |
Target: 5'- --gGCCgcugucGAAGcuGCCGGCGUCGAc -3' miRNA: 3'- cugCGGauguu-CUUC--CGGCCGCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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