miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27682 5' -52.9 NC_005882.1 + 12814 0.66 0.725588
Target:  5'- -uUCGAgcgcGUgCCGGgCUUcucggcgaacagGUCGCCGGCg -3'
miRNA:   3'- uuAGCUa---CA-GGUUgGAA------------CAGCGGCCG- -5'
27682 5' -52.9 NC_005882.1 + 13087 0.66 0.703076
Target:  5'- -uUCGAUGUCgCGGCUgcGgcgGCUGGCg -3'
miRNA:   3'- uuAGCUACAG-GUUGGaaCag-CGGCCG- -5'
27682 5' -52.9 NC_005882.1 + 21665 0.67 0.657236
Target:  5'- --aCGGUGUCCGggagcgcggcGCCUuccgGUCGaCgGGCa -3'
miRNA:   3'- uuaGCUACAGGU----------UGGAa---CAGC-GgCCG- -5'
27682 5' -52.9 NC_005882.1 + 30607 0.68 0.61907
Target:  5'- -cUCGGUcUCCGgcacgucgaccgucACCUUGUCGgCCGcGCg -3'
miRNA:   3'- uuAGCUAcAGGU--------------UGGAACAGC-GGC-CG- -5'
27682 5' -52.9 NC_005882.1 + 16210 0.68 0.610978
Target:  5'- cAUCG-UG-CCGAUCgacGUCGUCGGCa -3'
miRNA:   3'- uUAGCuACaGGUUGGaa-CAGCGGCCG- -5'
27682 5' -52.9 NC_005882.1 + 20512 0.68 0.576456
Target:  5'- -uUCGAUGacgCCGACCggaucgcUGCCGGCc -3'
miRNA:   3'- uuAGCUACa--GGUUGGaaca---GCGGCCG- -5'
27682 5' -52.9 NC_005882.1 + 25170 0.68 0.576456
Target:  5'- -cUCGGg--CCGGCCgucGUgGCCGGCu -3'
miRNA:   3'- uuAGCUacaGGUUGGaa-CAgCGGCCG- -5'
27682 5' -52.9 NC_005882.1 + 17949 0.69 0.542388
Target:  5'- -cUUGAgcGUCguGCCgaggcgGUCGCCGGCc -3'
miRNA:   3'- uuAGCUa-CAGguUGGaa----CAGCGGCCG- -5'
27682 5' -52.9 NC_005882.1 + 14762 0.7 0.465933
Target:  5'- cGUCGAUGaUCacgCGGCCUUGcUUGCCGcGCa -3'
miRNA:   3'- uUAGCUAC-AG---GUUGGAAC-AGCGGC-CG- -5'
27682 5' -52.9 NC_005882.1 + 31992 0.7 0.465933
Target:  5'- cGUCGAcGUCCGAUCgccGaCGCCGGUc -3'
miRNA:   3'- uUAGCUaCAGGUUGGaa-CaGCGGCCG- -5'
27682 5' -52.9 NC_005882.1 + 3263 0.71 0.424822
Target:  5'- gGAUCGucggCCGGCCgccGUCGCgCGGCg -3'
miRNA:   3'- -UUAGCuacaGGUUGGaa-CAGCG-GCCG- -5'
27682 5' -52.9 NC_005882.1 + 12689 0.72 0.349507
Target:  5'- -uUCGAgcuUGg-CGACCUUcgcGUCGCCGGCa -3'
miRNA:   3'- uuAGCU---ACagGUUGGAA---CAGCGGCCG- -5'
27682 5' -52.9 NC_005882.1 + 25579 0.73 0.307495
Target:  5'- uGAUCGAuUGUCCGGCCgaggcgGUCGUacUGGCc -3'
miRNA:   3'- -UUAGCU-ACAGGUUGGaa----CAGCG--GCCG- -5'
27682 5' -52.9 NC_005882.1 + 19114 0.76 0.204852
Target:  5'- gGAUCGAccuggguggGUUCGGCCUgcagGUUGCCGGCc -3'
miRNA:   3'- -UUAGCUa--------CAGGUUGGAa---CAGCGGCCG- -5'
27682 5' -52.9 NC_005882.1 + 20741 0.8 0.108402
Target:  5'- ---aGAUGUCCGugaagcgguCCUUGUCGUCGGCa -3'
miRNA:   3'- uuagCUACAGGUu--------GGAACAGCGGCCG- -5'
27682 5' -52.9 NC_005882.1 + 26264 1.1 0.000772
Target:  5'- aAAUCGAUGUCCAACCUUGUCGCCGGCg -3'
miRNA:   3'- -UUAGCUACAGGUUGGAACAGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.