miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27683 5' -53.1 NC_005882.1 + 2163 0.66 0.708859
Target:  5'- cGACAaggaaggCCAGAUCAacacCGGCCGCgUGCUc -3'
miRNA:   3'- -CUGUa------GGUCUGGUa---GUUGGUGgACGA- -5'
27683 5' -53.1 NC_005882.1 + 32986 0.66 0.697444
Target:  5'- -cCGUCCGGGCCAccuUCGACCGgaUCgGCg -3'
miRNA:   3'- cuGUAGGUCUGGU---AGUUGGU--GGaCGa -5'
27683 5' -53.1 NC_005882.1 + 21598 0.67 0.639565
Target:  5'- uGACAUCCuugauGACCGUCGGa-ACCgGCg -3'
miRNA:   3'- -CUGUAGGu----CUGGUAGUUggUGGaCGa -5'
27683 5' -53.1 NC_005882.1 + 24838 0.67 0.627917
Target:  5'- gGGCGcCCAG-CgAUCAGCCGCCgaGCa -3'
miRNA:   3'- -CUGUaGGUCuGgUAGUUGGUGGa-CGa -5'
27683 5' -53.1 NC_005882.1 + 2306 0.67 0.604645
Target:  5'- cGCAUCCAGcguGCCAUCcaaGACCGCaucGCg -3'
miRNA:   3'- cUGUAGGUC---UGGUAG---UUGGUGga-CGa -5'
27683 5' -53.1 NC_005882.1 + 29169 0.67 0.604645
Target:  5'- cGCAUCgAG-CCAUCGGCCAUCcGUg -3'
miRNA:   3'- cUGUAGgUCuGGUAGUUGGUGGaCGa -5'
27683 5' -53.1 NC_005882.1 + 17603 0.68 0.569961
Target:  5'- uGGCGccUgCAGACCAUCuACCgaacgaACCUGCa -3'
miRNA:   3'- -CUGU--AgGUCUGGUAGuUGG------UGGACGa -5'
27683 5' -53.1 NC_005882.1 + 24027 0.68 0.569961
Target:  5'- gGACAUCCAGGCgAUC-AUgGCCgaGCa -3'
miRNA:   3'- -CUGUAGGUCUGgUAGuUGgUGGa-CGa -5'
27683 5' -53.1 NC_005882.1 + 16876 0.68 0.547106
Target:  5'- cGAgAUCCAGGCCGgccgCGACCAaaaGCUg -3'
miRNA:   3'- -CUgUAGGUCUGGUa---GUUGGUggaCGA- -5'
27683 5' -53.1 NC_005882.1 + 29873 0.69 0.480581
Target:  5'- uGGCcgCCGGugCGUCGAUCGagCUGCUc -3'
miRNA:   3'- -CUGuaGGUCugGUAGUUGGUg-GACGA- -5'
27683 5' -53.1 NC_005882.1 + 24421 0.71 0.412283
Target:  5'- --aGUCCAGcuccagcacuuccucGCCGUCGAUgACCUGCUu -3'
miRNA:   3'- cugUAGGUC---------------UGGUAGUUGgUGGACGA- -5'
27683 5' -53.1 NC_005882.1 + 20602 0.8 0.096198
Target:  5'- gGGCAUCguGACCGUCGACCugCUGa- -3'
miRNA:   3'- -CUGUAGguCUGGUAGUUGGugGACga -5'
27683 5' -53.1 NC_005882.1 + 26449 1.07 0.001163
Target:  5'- gGACAUCCAGACCAUCAACCACCUGCUc -3'
miRNA:   3'- -CUGUAGGUCUGGUAGUUGGUGGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.