miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27684 5' -62.1 NC_005882.1 + 28859 0.66 0.312989
Target:  5'- gGCGGUucUCGCGagcggcauugcGCUGUCgAUUCCGGUc -3'
miRNA:   3'- gCGUCA--AGCGC-----------CGGCGGgUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 15511 0.66 0.312235
Target:  5'- uCGUGGUaUCGCGagcacauGCCGCCCGUgaaggCGGCg -3'
miRNA:   3'- -GCGUCA-AGCGC-------CGGCGGGUAgg---GCCG- -5'
27684 5' -62.1 NC_005882.1 + 12380 0.66 0.301081
Target:  5'- aGCGGUUcaacgccggccggcaCGCGGCCGCUUuccgcgagaaCCgCGGCu -3'
miRNA:   3'- gCGUCAA---------------GCGCCGGCGGGua--------GG-GCCG- -5'
27684 5' -62.1 NC_005882.1 + 25166 0.66 0.298159
Target:  5'- gGCcGgccgUCGUGGCCGgcuccuacCUCAUCgCGGCg -3'
miRNA:   3'- gCGuCa---AGCGCCGGC--------GGGUAGgGCCG- -5'
27684 5' -62.1 NC_005882.1 + 13788 0.66 0.298159
Target:  5'- aGUAcUUgGcCGGCCGCgCGaugCCCGGCu -3'
miRNA:   3'- gCGUcAAgC-GCCGGCGgGUa--GGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 28884 0.66 0.297433
Target:  5'- aCGCuggGGUUCGCGGCaaugaucCGCUCAUa--GGCa -3'
miRNA:   3'- -GCG---UCAAGCGCCG-------GCGGGUAgggCCG- -5'
27684 5' -62.1 NC_005882.1 + 29993 0.66 0.28388
Target:  5'- gCGCucggCGCucGCCGUCCAggCCGGCa -3'
miRNA:   3'- -GCGucaaGCGc-CGGCGGGUagGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 28590 0.66 0.28388
Target:  5'- gCGCAGgaUGcCGGCCGCCuCGggaaUCUGGUc -3'
miRNA:   3'- -GCGUCaaGC-GCCGGCGG-GUa---GGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 17116 0.66 0.28388
Target:  5'- aGguGUUCaguGCGGCgucgaGCgCGUCCUGGUc -3'
miRNA:   3'- gCguCAAG---CGCCGg----CGgGUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 26046 0.66 0.279703
Target:  5'- gCGCGGUUgaacgccuccuucagCGcCGcGUCGCCCuugAUCCCGaGCg -3'
miRNA:   3'- -GCGUCAA---------------GC-GC-CGGCGGG---UAGGGC-CG- -5'
27684 5' -62.1 NC_005882.1 + 16545 0.66 0.276946
Target:  5'- uGCAGgaUGCuGUCGCCgugGUCCCGGa -3'
miRNA:   3'- gCGUCaaGCGcCGGCGGg--UAGGGCCg -5'
27684 5' -62.1 NC_005882.1 + 21499 0.66 0.270147
Target:  5'- gCGCAcuugCGCGGCCGCuacaaccugccgCUGUCgCCGGUu -3'
miRNA:   3'- -GCGUcaa-GCGCCGGCG------------GGUAG-GGCCG- -5'
27684 5' -62.1 NC_005882.1 + 31618 0.67 0.263483
Target:  5'- uGCGGUuucgcacgUCGCGGCCacGUCgAUCgacaacuggCCGGCg -3'
miRNA:   3'- gCGUCA--------AGCGCCGG--CGGgUAG---------GGCCG- -5'
27684 5' -62.1 NC_005882.1 + 14844 0.67 0.263483
Target:  5'- aGCuGgUCaCGGaCGUCCGUUCCGGCa -3'
miRNA:   3'- gCGuCaAGcGCCgGCGGGUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 12575 0.67 0.256954
Target:  5'- gGCGGcuggCGCGGUCGCUUucUUCGGCg -3'
miRNA:   3'- gCGUCaa--GCGCCGGCGGGuaGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 2925 0.67 0.256954
Target:  5'- aCGUuGUUCGCGGCUcgcagGUCgGUgCCGGUc -3'
miRNA:   3'- -GCGuCAAGCGCCGG-----CGGgUAgGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 4628 0.67 0.256954
Target:  5'- uCGCAGgcgGCGGUCGCUCAgaucgugaaUCaCGGCg -3'
miRNA:   3'- -GCGUCaagCGCCGGCGGGU---------AGgGCCG- -5'
27684 5' -62.1 NC_005882.1 + 3310 0.67 0.250557
Target:  5'- aCGCGGUa-GCccaGGCCGCgCAgcgCCCGcGCg -3'
miRNA:   3'- -GCGUCAagCG---CCGGCGgGUa--GGGC-CG- -5'
27684 5' -62.1 NC_005882.1 + 31078 0.67 0.244293
Target:  5'- uCGCAG--CGCGGCU-CCCA--CCGGCg -3'
miRNA:   3'- -GCGUCaaGCGCCGGcGGGUagGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 10181 0.67 0.244293
Target:  5'- aCGUuGUUCGCGGCacucuugggcgGCgUCAUCCuCGGCu -3'
miRNA:   3'- -GCGuCAAGCGCCGg----------CG-GGUAGG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.