Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27684 | 5' | -62.1 | NC_005882.1 | + | 28590 | 0.66 | 0.28388 |
Target: 5'- gCGCAGgaUGcCGGCCGCCuCGggaaUCUGGUc -3' miRNA: 3'- -GCGUCaaGC-GCCGGCGG-GUa---GGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 15511 | 0.66 | 0.312235 |
Target: 5'- uCGUGGUaUCGCGagcacauGCCGCCCGUgaaggCGGCg -3' miRNA: 3'- -GCGUCA-AGCGC-------CGGCGGGUAgg---GCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 12380 | 0.66 | 0.301081 |
Target: 5'- aGCGGUUcaacgccggccggcaCGCGGCCGCUUuccgcgagaaCCgCGGCu -3' miRNA: 3'- gCGUCAA---------------GCGCCGGCGGGua--------GG-GCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 29993 | 0.66 | 0.28388 |
Target: 5'- gCGCucggCGCucGCCGUCCAggCCGGCa -3' miRNA: 3'- -GCGucaaGCGc-CGGCGGGUagGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 16545 | 0.66 | 0.276946 |
Target: 5'- uGCAGgaUGCuGUCGCCgugGUCCCGGa -3' miRNA: 3'- gCGUCaaGCGcCGGCGGg--UAGGGCCg -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 21499 | 0.66 | 0.270147 |
Target: 5'- gCGCAcuugCGCGGCCGCuacaaccugccgCUGUCgCCGGUu -3' miRNA: 3'- -GCGUcaa-GCGCCGGCG------------GGUAG-GGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 28859 | 0.66 | 0.312989 |
Target: 5'- gGCGGUucUCGCGagcggcauugcGCUGUCgAUUCCGGUc -3' miRNA: 3'- gCGUCA--AGCGC-----------CGGCGGgUAGGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 25166 | 0.66 | 0.298159 |
Target: 5'- gGCcGgccgUCGUGGCCGgcuccuacCUCAUCgCGGCg -3' miRNA: 3'- gCGuCa---AGCGCCGGC--------GGGUAGgGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 28884 | 0.66 | 0.297433 |
Target: 5'- aCGCuggGGUUCGCGGCaaugaucCGCUCAUa--GGCa -3' miRNA: 3'- -GCG---UCAAGCGCCG-------GCGGGUAgggCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 17116 | 0.66 | 0.28388 |
Target: 5'- aGguGUUCaguGCGGCgucgaGCgCGUCCUGGUc -3' miRNA: 3'- gCguCAAG---CGCCGg----CGgGUAGGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 26046 | 0.66 | 0.279703 |
Target: 5'- gCGCGGUUgaacgccuccuucagCGcCGcGUCGCCCuugAUCCCGaGCg -3' miRNA: 3'- -GCGUCAA---------------GC-GC-CGGCGGG---UAGGGC-CG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 13788 | 0.66 | 0.298159 |
Target: 5'- aGUAcUUgGcCGGCCGCgCGaugCCCGGCu -3' miRNA: 3'- gCGUcAAgC-GCCGGCGgGUa--GGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 27080 | 0.67 | 0.240597 |
Target: 5'- aGCAGcgCGCGGCCaacgacgagcgcgccGCgcccgaaucCCAuaaacaggcUCCCGGCa -3' miRNA: 3'- gCGUCaaGCGCCGG---------------CG---------GGU---------AGGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 4628 | 0.67 | 0.256954 |
Target: 5'- uCGCAGgcgGCGGUCGCUCAgaucgugaaUCaCGGCg -3' miRNA: 3'- -GCGUCaagCGCCGGCGGGU---------AGgGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 30075 | 0.67 | 0.238159 |
Target: 5'- uCGCGGU--GCcGCCGCCUuUgCCGGCc -3' miRNA: 3'- -GCGUCAagCGcCGGCGGGuAgGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 31618 | 0.67 | 0.263483 |
Target: 5'- uGCGGUuucgcacgUCGCGGCCacGUCgAUCgacaacuggCCGGCg -3' miRNA: 3'- gCGUCA--------AGCGCCGG--CGGgUAG---------GGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 14844 | 0.67 | 0.263483 |
Target: 5'- aGCuGgUCaCGGaCGUCCGUUCCGGCa -3' miRNA: 3'- gCGuCaAGcGCCgGCGGGUAGGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 12575 | 0.67 | 0.256954 |
Target: 5'- gGCGGcuggCGCGGUCGCUUucUUCGGCg -3' miRNA: 3'- gCGUCaa--GCGCCGGCGGGuaGGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 2925 | 0.67 | 0.256954 |
Target: 5'- aCGUuGUUCGCGGCUcgcagGUCgGUgCCGGUc -3' miRNA: 3'- -GCGuCAAGCGCCGG-----CGGgUAgGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 3310 | 0.67 | 0.250557 |
Target: 5'- aCGCGGUa-GCccaGGCCGCgCAgcgCCCGcGCg -3' miRNA: 3'- -GCGUCAagCG---CCGGCGgGUa--GGGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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