miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27684 5' -62.1 NC_005882.1 + 26705 1.1 0.000123
Target:  5'- gCGCAGUUCGCGGCCGCCCAUCCCGGCc -3'
miRNA:   3'- -GCGUCAAGCGCCGGCGGGUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 27604 0.79 0.034413
Target:  5'- aCGCAGgcCGCGGCCGCggCGUCCCuGCa -3'
miRNA:   3'- -GCGUCaaGCGCCGGCGg-GUAGGGcCG- -5'
27684 5' -62.1 NC_005882.1 + 27668 0.76 0.054413
Target:  5'- uGCAGggacgcCGCGGCCGCggccugcgucgCCAUgCCGGCg -3'
miRNA:   3'- gCGUCaa----GCGCCGGCG-----------GGUAgGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 12717 0.75 0.064522
Target:  5'- aCGCAGcgCGCGGCgGCgC-UCgCCGGCg -3'
miRNA:   3'- -GCGUCaaGCGCCGgCGgGuAG-GGCCG- -5'
27684 5' -62.1 NC_005882.1 + 18980 0.75 0.066374
Target:  5'- aGCAGccgUCGCGGCgagGUCCGUUUCGGCg -3'
miRNA:   3'- gCGUCa--AGCGCCGg--CGGGUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 12464 0.73 0.085512
Target:  5'- cCGCGGUUCucgcggaaaGCGGCCGCgugCCGg-CCGGCg -3'
miRNA:   3'- -GCGUCAAG---------CGCCGGCG---GGUagGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 1748 0.73 0.087938
Target:  5'- gCGUGGgcgCGCgGGCCGCCCGUaCCGGa -3'
miRNA:   3'- -GCGUCaa-GCG-CCGGCGGGUAgGGCCg -5'
27684 5' -62.1 NC_005882.1 + 19939 0.73 0.09043
Target:  5'- uGCAcGaaUGCGGCCGUCCAgCUCGGCg -3'
miRNA:   3'- gCGU-CaaGCGCCGGCGGGUaGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 23023 0.73 0.098312
Target:  5'- uCGUAGgUCGCcuuGGCCGCCgucgCA-CCCGGCg -3'
miRNA:   3'- -GCGUCaAGCG---CCGGCGG----GUaGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 14982 0.71 0.126018
Target:  5'- gCGCAGgcaaaugCGCuGGUagaGCCCGUCCUGGa -3'
miRNA:   3'- -GCGUCaa-----GCG-CCGg--CGGGUAGGGCCg -5'
27684 5' -62.1 NC_005882.1 + 24894 0.71 0.126018
Target:  5'- gGCGGcugaUCGCuGGgCGCCCGcauUUCCGGCg -3'
miRNA:   3'- gCGUCa---AGCG-CCgGCGGGU---AGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 17037 0.71 0.129509
Target:  5'- gGCGGacaccggcaGCGGCCGCUCGUCCaGGUc -3'
miRNA:   3'- gCGUCaag------CGCCGGCGGGUAGGgCCG- -5'
27684 5' -62.1 NC_005882.1 + 25954 0.71 0.13309
Target:  5'- gGC-GUUCGUGGCCGUcgCCAcgcgCCCGaGCa -3'
miRNA:   3'- gCGuCAAGCGCCGGCG--GGUa---GGGC-CG- -5'
27684 5' -62.1 NC_005882.1 + 30686 0.7 0.144386
Target:  5'- gCGCAG--CGCcaucGCCGCCCGaUCCGGCc -3'
miRNA:   3'- -GCGUCaaGCGc---CGGCGGGUaGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 22510 0.7 0.152396
Target:  5'- cCGC-GUUCGCGGCgGUCUucgguuggucUUCCGGCa -3'
miRNA:   3'- -GCGuCAAGCGCCGgCGGGu---------AGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 25560 0.7 0.15655
Target:  5'- gGCGG-UCGUacuGGCCGCgCAgCUCGGCg -3'
miRNA:   3'- gCGUCaAGCG---CCGGCGgGUaGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 19985 0.7 0.160377
Target:  5'- cCGC-GUUCGCGGCCGCCgCGUaaucgaccuugugUUCGcGCa -3'
miRNA:   3'- -GCGuCAAGCGCCGGCGG-GUA-------------GGGC-CG- -5'
27684 5' -62.1 NC_005882.1 + 26959 0.7 0.160807
Target:  5'- gGCaAGUUCGCGGCCGUgaucgggCGUgCCGGg -3'
miRNA:   3'- gCG-UCAAGCGCCGGCGg------GUAgGGCCg -5'
27684 5' -62.1 NC_005882.1 + 6456 0.69 0.18369
Target:  5'- gGCAGcgcgCGCGGCCGgCCA---CGGCa -3'
miRNA:   3'- gCGUCaa--GCGCCGGCgGGUaggGCCG- -5'
27684 5' -62.1 NC_005882.1 + 12131 0.69 0.193622
Target:  5'- cCGUcgacuGGaUCGCGGgCGCCUAU-CCGGCc -3'
miRNA:   3'- -GCG-----UCaAGCGCCgGCGGGUAgGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.