miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27684 5' -62.1 NC_005882.1 + 27080 0.67 0.240597
Target:  5'- aGCAGcgCGCGGCCaacgacgagcgcgccGCgcccgaaucCCAuaaacaggcUCCCGGCa -3'
miRNA:   3'- gCGUCaaGCGCCGG---------------CG---------GGU---------AGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 25112 0.67 0.238159
Target:  5'- uGUGGcUUUGCGGCCgGCUCGggcgCCgGGCc -3'
miRNA:   3'- gCGUC-AAGCGCCGG-CGGGUa---GGgCCG- -5'
27684 5' -62.1 NC_005882.1 + 30075 0.67 0.238159
Target:  5'- uCGCGGU--GCcGCCGCCUuUgCCGGCc -3'
miRNA:   3'- -GCGUCAagCGcCGGCGGGuAgGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 2548 0.67 0.232154
Target:  5'- gGCAGgaCGCgaaaGGCUGCCUgAUUCCGGa -3'
miRNA:   3'- gCGUCaaGCG----CCGGCGGG-UAGGGCCg -5'
27684 5' -62.1 NC_005882.1 + 28762 0.67 0.232154
Target:  5'- uCGCGacuUUCGCGGCCaguuuGCUCAgaCUCGGCg -3'
miRNA:   3'- -GCGUc--AAGCGCCGG-----CGGGUa-GGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 27570 0.68 0.226278
Target:  5'- gGCGGUcgccgcgcgCGCGGCCGCCgG-CauGGCg -3'
miRNA:   3'- gCGUCAa--------GCGCCGGCGGgUaGggCCG- -5'
27684 5' -62.1 NC_005882.1 + 6645 0.68 0.220528
Target:  5'- uGCGG--CGC-GCCGUgCGUCUCGGCg -3'
miRNA:   3'- gCGUCaaGCGcCGGCGgGUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 25772 0.68 0.220528
Target:  5'- uGCGGUaaUCGCGauGUCGCgCAggCCGGCu -3'
miRNA:   3'- gCGUCA--AGCGC--CGGCGgGUagGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 18517 0.68 0.220528
Target:  5'- cCGCccGUcCGUGGuuGCCCGUUaCGGCu -3'
miRNA:   3'- -GCGu-CAaGCGCCggCGGGUAGgGCCG- -5'
27684 5' -62.1 NC_005882.1 + 26688 0.68 0.214903
Target:  5'- aGCAGcgCGCGGCCaaCCGugaUCCCGa- -3'
miRNA:   3'- gCGUCaaGCGCCGGcgGGU---AGGGCcg -5'
27684 5' -62.1 NC_005882.1 + 25678 0.68 0.209402
Target:  5'- gCGCuGUUCGgcaGGCCGCCaccuUCgaagCCGGCc -3'
miRNA:   3'- -GCGuCAAGCg--CCGGCGGgu--AG----GGCCG- -5'
27684 5' -62.1 NC_005882.1 + 18660 0.68 0.204022
Target:  5'- gGCGGUUCGCuG-CGUCCAUCaagUGGCg -3'
miRNA:   3'- gCGUCAAGCGcCgGCGGGUAGg--GCCG- -5'
27684 5' -62.1 NC_005882.1 + 3475 0.68 0.198763
Target:  5'- gGCGGUgaCGacCGGCaCGCCCAggcCCgCGGCg -3'
miRNA:   3'- gCGUCAa-GC--GCCG-GCGGGUa--GG-GCCG- -5'
27684 5' -62.1 NC_005882.1 + 12131 0.69 0.193622
Target:  5'- cCGUcgacuGGaUCGCGGgCGCCUAU-CCGGCc -3'
miRNA:   3'- -GCG-----UCaAGCGCCgGCGGGUAgGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 6456 0.69 0.18369
Target:  5'- gGCAGcgcgCGCGGCCGgCCA---CGGCa -3'
miRNA:   3'- gCGUCaa--GCGCCGGCgGGUaggGCCG- -5'
27684 5' -62.1 NC_005882.1 + 26959 0.7 0.160807
Target:  5'- gGCaAGUUCGCGGCCGUgaucgggCGUgCCGGg -3'
miRNA:   3'- gCG-UCAAGCGCCGGCGg------GUAgGGCCg -5'
27684 5' -62.1 NC_005882.1 + 19985 0.7 0.160377
Target:  5'- cCGC-GUUCGCGGCCGCCgCGUaaucgaccuugugUUCGcGCa -3'
miRNA:   3'- -GCGuCAAGCGCCGGCGG-GUA-------------GGGC-CG- -5'
27684 5' -62.1 NC_005882.1 + 25560 0.7 0.15655
Target:  5'- gGCGG-UCGUacuGGCCGCgCAgCUCGGCg -3'
miRNA:   3'- gCGUCaAGCG---CCGGCGgGUaGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 22510 0.7 0.152396
Target:  5'- cCGC-GUUCGCGGCgGUCUucgguuggucUUCCGGCa -3'
miRNA:   3'- -GCGuCAAGCGCCGgCGGGu---------AGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 30686 0.7 0.144386
Target:  5'- gCGCAG--CGCcaucGCCGCCCGaUCCGGCc -3'
miRNA:   3'- -GCGUCaaGCGc---CGGCGGGUaGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.