Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27684 | 5' | -62.1 | NC_005882.1 | + | 1748 | 0.73 | 0.087938 |
Target: 5'- gCGUGGgcgCGCgGGCCGCCCGUaCCGGa -3' miRNA: 3'- -GCGUCaa-GCG-CCGGCGGGUAgGGCCg -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 2548 | 0.67 | 0.232154 |
Target: 5'- gGCAGgaCGCgaaaGGCUGCCUgAUUCCGGa -3' miRNA: 3'- gCGUCaaGCG----CCGGCGGG-UAGGGCCg -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 2925 | 0.67 | 0.256954 |
Target: 5'- aCGUuGUUCGCGGCUcgcagGUCgGUgCCGGUc -3' miRNA: 3'- -GCGuCAAGCGCCGG-----CGGgUAgGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 3310 | 0.67 | 0.250557 |
Target: 5'- aCGCGGUa-GCccaGGCCGCgCAgcgCCCGcGCg -3' miRNA: 3'- -GCGUCAagCG---CCGGCGgGUa--GGGC-CG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 3475 | 0.68 | 0.198763 |
Target: 5'- gGCGGUgaCGacCGGCaCGCCCAggcCCgCGGCg -3' miRNA: 3'- gCGUCAa-GC--GCCG-GCGGGUa--GG-GCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 4628 | 0.67 | 0.256954 |
Target: 5'- uCGCAGgcgGCGGUCGCUCAgaucgugaaUCaCGGCg -3' miRNA: 3'- -GCGUCaagCGCCGGCGGGU---------AGgGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 6456 | 0.69 | 0.18369 |
Target: 5'- gGCAGcgcgCGCGGCCGgCCA---CGGCa -3' miRNA: 3'- gCGUCaa--GCGCCGGCgGGUaggGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 6645 | 0.68 | 0.220528 |
Target: 5'- uGCGG--CGC-GCCGUgCGUCUCGGCg -3' miRNA: 3'- gCGUCaaGCGcCGGCGgGUAGGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 10181 | 0.67 | 0.244293 |
Target: 5'- aCGUuGUUCGCGGCacucuugggcgGCgUCAUCCuCGGCu -3' miRNA: 3'- -GCGuCAAGCGCCGg----------CG-GGUAGG-GCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 12131 | 0.69 | 0.193622 |
Target: 5'- cCGUcgacuGGaUCGCGGgCGCCUAU-CCGGCc -3' miRNA: 3'- -GCG-----UCaAGCGCCgGCGGGUAgGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 12380 | 0.66 | 0.301081 |
Target: 5'- aGCGGUUcaacgccggccggcaCGCGGCCGCUUuccgcgagaaCCgCGGCu -3' miRNA: 3'- gCGUCAA---------------GCGCCGGCGGGua--------GG-GCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 12464 | 0.73 | 0.085512 |
Target: 5'- cCGCGGUUCucgcggaaaGCGGCCGCgugCCGg-CCGGCg -3' miRNA: 3'- -GCGUCAAG---------CGCCGGCG---GGUagGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 12575 | 0.67 | 0.256954 |
Target: 5'- gGCGGcuggCGCGGUCGCUUucUUCGGCg -3' miRNA: 3'- gCGUCaa--GCGCCGGCGGGuaGGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 12717 | 0.75 | 0.064522 |
Target: 5'- aCGCAGcgCGCGGCgGCgC-UCgCCGGCg -3' miRNA: 3'- -GCGUCaaGCGCCGgCGgGuAG-GGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 13788 | 0.66 | 0.298159 |
Target: 5'- aGUAcUUgGcCGGCCGCgCGaugCCCGGCu -3' miRNA: 3'- gCGUcAAgC-GCCGGCGgGUa--GGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 14844 | 0.67 | 0.263483 |
Target: 5'- aGCuGgUCaCGGaCGUCCGUUCCGGCa -3' miRNA: 3'- gCGuCaAGcGCCgGCGGGUAGGGCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 14982 | 0.71 | 0.126018 |
Target: 5'- gCGCAGgcaaaugCGCuGGUagaGCCCGUCCUGGa -3' miRNA: 3'- -GCGUCaa-----GCG-CCGg--CGGGUAGGGCCg -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 15511 | 0.66 | 0.312235 |
Target: 5'- uCGUGGUaUCGCGagcacauGCCGCCCGUgaaggCGGCg -3' miRNA: 3'- -GCGUCA-AGCGC-------CGGCGGGUAgg---GCCG- -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 16545 | 0.66 | 0.276946 |
Target: 5'- uGCAGgaUGCuGUCGCCgugGUCCCGGa -3' miRNA: 3'- gCGUCaaGCGcCGGCGGg--UAGGGCCg -5' |
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27684 | 5' | -62.1 | NC_005882.1 | + | 17037 | 0.71 | 0.129509 |
Target: 5'- gGCGGacaccggcaGCGGCCGCUCGUCCaGGUc -3' miRNA: 3'- gCGUCaag------CGCCGGCGGGUAGGgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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