miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27684 5' -62.1 NC_005882.1 + 17116 0.66 0.28388
Target:  5'- aGguGUUCaguGCGGCgucgaGCgCGUCCUGGUc -3'
miRNA:   3'- gCguCAAG---CGCCGg----CGgGUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 18517 0.68 0.220528
Target:  5'- cCGCccGUcCGUGGuuGCCCGUUaCGGCu -3'
miRNA:   3'- -GCGu-CAaGCGCCggCGGGUAGgGCCG- -5'
27684 5' -62.1 NC_005882.1 + 18660 0.68 0.204022
Target:  5'- gGCGGUUCGCuG-CGUCCAUCaagUGGCg -3'
miRNA:   3'- gCGUCAAGCGcCgGCGGGUAGg--GCCG- -5'
27684 5' -62.1 NC_005882.1 + 18980 0.75 0.066374
Target:  5'- aGCAGccgUCGCGGCgagGUCCGUUUCGGCg -3'
miRNA:   3'- gCGUCa--AGCGCCGg--CGGGUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 19939 0.73 0.09043
Target:  5'- uGCAcGaaUGCGGCCGUCCAgCUCGGCg -3'
miRNA:   3'- gCGU-CaaGCGCCGGCGGGUaGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 19985 0.7 0.160377
Target:  5'- cCGC-GUUCGCGGCCGCCgCGUaaucgaccuugugUUCGcGCa -3'
miRNA:   3'- -GCGuCAAGCGCCGGCGG-GUA-------------GGGC-CG- -5'
27684 5' -62.1 NC_005882.1 + 21499 0.66 0.270147
Target:  5'- gCGCAcuugCGCGGCCGCuacaaccugccgCUGUCgCCGGUu -3'
miRNA:   3'- -GCGUcaa-GCGCCGGCG------------GGUAG-GGCCG- -5'
27684 5' -62.1 NC_005882.1 + 22510 0.7 0.152396
Target:  5'- cCGC-GUUCGCGGCgGUCUucgguuggucUUCCGGCa -3'
miRNA:   3'- -GCGuCAAGCGCCGgCGGGu---------AGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 23023 0.73 0.098312
Target:  5'- uCGUAGgUCGCcuuGGCCGCCgucgCA-CCCGGCg -3'
miRNA:   3'- -GCGUCaAGCG---CCGGCGG----GUaGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 24894 0.71 0.126018
Target:  5'- gGCGGcugaUCGCuGGgCGCCCGcauUUCCGGCg -3'
miRNA:   3'- gCGUCa---AGCG-CCgGCGGGU---AGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 25112 0.67 0.238159
Target:  5'- uGUGGcUUUGCGGCCgGCUCGggcgCCgGGCc -3'
miRNA:   3'- gCGUC-AAGCGCCGG-CGGGUa---GGgCCG- -5'
27684 5' -62.1 NC_005882.1 + 25166 0.66 0.298159
Target:  5'- gGCcGgccgUCGUGGCCGgcuccuacCUCAUCgCGGCg -3'
miRNA:   3'- gCGuCa---AGCGCCGGC--------GGGUAGgGCCG- -5'
27684 5' -62.1 NC_005882.1 + 25560 0.7 0.15655
Target:  5'- gGCGG-UCGUacuGGCCGCgCAgCUCGGCg -3'
miRNA:   3'- gCGUCaAGCG---CCGGCGgGUaGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 25678 0.68 0.209402
Target:  5'- gCGCuGUUCGgcaGGCCGCCaccuUCgaagCCGGCc -3'
miRNA:   3'- -GCGuCAAGCg--CCGGCGGgu--AG----GGCCG- -5'
27684 5' -62.1 NC_005882.1 + 25772 0.68 0.220528
Target:  5'- uGCGGUaaUCGCGauGUCGCgCAggCCGGCu -3'
miRNA:   3'- gCGUCA--AGCGC--CGGCGgGUagGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 25954 0.71 0.13309
Target:  5'- gGC-GUUCGUGGCCGUcgCCAcgcgCCCGaGCa -3'
miRNA:   3'- gCGuCAAGCGCCGGCG--GGUa---GGGC-CG- -5'
27684 5' -62.1 NC_005882.1 + 26046 0.66 0.279703
Target:  5'- gCGCGGUUgaacgccuccuucagCGcCGcGUCGCCCuugAUCCCGaGCg -3'
miRNA:   3'- -GCGUCAA---------------GC-GC-CGGCGGG---UAGGGC-CG- -5'
27684 5' -62.1 NC_005882.1 + 26688 0.68 0.214903
Target:  5'- aGCAGcgCGCGGCCaaCCGugaUCCCGa- -3'
miRNA:   3'- gCGUCaaGCGCCGGcgGGU---AGGGCcg -5'
27684 5' -62.1 NC_005882.1 + 26705 1.1 0.000123
Target:  5'- gCGCAGUUCGCGGCCGCCCAUCCCGGCc -3'
miRNA:   3'- -GCGUCAAGCGCCGGCGGGUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 26959 0.7 0.160807
Target:  5'- gGCaAGUUCGCGGCCGUgaucgggCGUgCCGGg -3'
miRNA:   3'- gCG-UCAAGCGCCGGCGg------GUAgGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.