miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27684 5' -62.1 NC_005882.1 + 28859 0.66 0.312989
Target:  5'- gGCGGUucUCGCGagcggcauugcGCUGUCgAUUCCGGUc -3'
miRNA:   3'- gCGUCA--AGCGC-----------CGGCGGgUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 2925 0.67 0.256954
Target:  5'- aCGUuGUUCGCGGCUcgcagGUCgGUgCCGGUc -3'
miRNA:   3'- -GCGuCAAGCGCCGG-----CGGgUAgGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 12575 0.67 0.256954
Target:  5'- gGCGGcuggCGCGGUCGCUUucUUCGGCg -3'
miRNA:   3'- gCGUCaa--GCGCCGGCGGGuaGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 14844 0.67 0.263483
Target:  5'- aGCuGgUCaCGGaCGUCCGUUCCGGCa -3'
miRNA:   3'- gCGuCaAGcGCCgGCGGGUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 21499 0.66 0.270147
Target:  5'- gCGCAcuugCGCGGCCGCuacaaccugccgCUGUCgCCGGUu -3'
miRNA:   3'- -GCGUcaa-GCGCCGGCG------------GGUAG-GGCCG- -5'
27684 5' -62.1 NC_005882.1 + 16545 0.66 0.276946
Target:  5'- uGCAGgaUGCuGUCGCCgugGUCCCGGa -3'
miRNA:   3'- gCGUCaaGCGcCGGCGGg--UAGGGCCg -5'
27684 5' -62.1 NC_005882.1 + 29993 0.66 0.28388
Target:  5'- gCGCucggCGCucGCCGUCCAggCCGGCa -3'
miRNA:   3'- -GCGucaaGCGc-CGGCGGGUagGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 12380 0.66 0.301081
Target:  5'- aGCGGUUcaacgccggccggcaCGCGGCCGCUUuccgcgagaaCCgCGGCu -3'
miRNA:   3'- gCGUCAA---------------GCGCCGGCGGGua--------GG-GCCG- -5'
27684 5' -62.1 NC_005882.1 + 15511 0.66 0.312235
Target:  5'- uCGUGGUaUCGCGagcacauGCCGCCCGUgaaggCGGCg -3'
miRNA:   3'- -GCGUCA-AGCGC-------CGGCGGGUAgg---GCCG- -5'
27684 5' -62.1 NC_005882.1 + 3310 0.67 0.250557
Target:  5'- aCGCGGUa-GCccaGGCCGCgCAgcgCCCGcGCg -3'
miRNA:   3'- -GCGUCAagCG---CCGGCGgGUa--GGGC-CG- -5'
27684 5' -62.1 NC_005882.1 + 10181 0.67 0.244293
Target:  5'- aCGUuGUUCGCGGCacucuugggcgGCgUCAUCCuCGGCu -3'
miRNA:   3'- -GCGuCAAGCGCCGg----------CG-GGUAGG-GCCG- -5'
27684 5' -62.1 NC_005882.1 + 27570 0.68 0.226278
Target:  5'- gGCGGUcgccgcgcgCGCGGCCGCCgG-CauGGCg -3'
miRNA:   3'- gCGUCAa--------GCGCCGGCGGgUaGggCCG- -5'
27684 5' -62.1 NC_005882.1 + 27604 0.79 0.034413
Target:  5'- aCGCAGgcCGCGGCCGCggCGUCCCuGCa -3'
miRNA:   3'- -GCGUCaaGCGCCGGCGg-GUAGGGcCG- -5'
27684 5' -62.1 NC_005882.1 + 12717 0.75 0.064522
Target:  5'- aCGCAGcgCGCGGCgGCgC-UCgCCGGCg -3'
miRNA:   3'- -GCGUCaaGCGCCGgCGgGuAG-GGCCG- -5'
27684 5' -62.1 NC_005882.1 + 26959 0.7 0.160807
Target:  5'- gGCaAGUUCGCGGCCGUgaucgggCGUgCCGGg -3'
miRNA:   3'- gCG-UCAAGCGCCGGCGg------GUAgGGCCg -5'
27684 5' -62.1 NC_005882.1 + 12131 0.69 0.193622
Target:  5'- cCGUcgacuGGaUCGCGGgCGCCUAU-CCGGCc -3'
miRNA:   3'- -GCG-----UCaAGCGCCgGCGGGUAgGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 3475 0.68 0.198763
Target:  5'- gGCGGUgaCGacCGGCaCGCCCAggcCCgCGGCg -3'
miRNA:   3'- gCGUCAa-GC--GCCG-GCGGGUa--GG-GCCG- -5'
27684 5' -62.1 NC_005882.1 + 25678 0.68 0.209402
Target:  5'- gCGCuGUUCGgcaGGCCGCCaccuUCgaagCCGGCc -3'
miRNA:   3'- -GCGuCAAGCg--CCGGCGGgu--AG----GGCCG- -5'
27684 5' -62.1 NC_005882.1 + 6645 0.68 0.220528
Target:  5'- uGCGG--CGC-GCCGUgCGUCUCGGCg -3'
miRNA:   3'- gCGUCaaGCGcCGGCGgGUAGGGCCG- -5'
27684 5' -62.1 NC_005882.1 + 18517 0.68 0.220528
Target:  5'- cCGCccGUcCGUGGuuGCCCGUUaCGGCu -3'
miRNA:   3'- -GCGu-CAaGCGCCggCGGGUAGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.