miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27686 5' -54.5 NC_005882.1 + 13255 0.66 0.66723
Target:  5'- aUCAGCCggcaggCGgacaacacgGCGCG-CCUGGAg -3'
miRNA:   3'- gAGUUGGaca---GCaa-------CGCGCuGGACCU- -5'
27686 5' -54.5 NC_005882.1 + 4569 0.66 0.655885
Target:  5'- cCUCGACCUG-CGgga-GCGAauucucgacuaCCUGGAa -3'
miRNA:   3'- -GAGUUGGACaGCaacgCGCU-----------GGACCU- -5'
27686 5' -54.5 NC_005882.1 + 30827 0.66 0.621757
Target:  5'- -gCGGCCaUGUUGccGCGCGACCagucgGGGg -3'
miRNA:   3'- gaGUUGG-ACAGCaaCGCGCUGGa----CCU- -5'
27686 5' -54.5 NC_005882.1 + 25406 0.66 0.610387
Target:  5'- cCUCGGCCgcGUCGccgacgagcUGCGCGcgaggcauacccGCCUGGGg -3'
miRNA:   3'- -GAGUUGGa-CAGCa--------ACGCGC------------UGGACCU- -5'
27686 5' -54.5 NC_005882.1 + 16117 0.67 0.597903
Target:  5'- cCUCGACCUGUCucggauCGUGACCgagaugcUGGAc -3'
miRNA:   3'- -GAGUUGGACAGcaac--GCGCUGG-------ACCU- -5'
27686 5' -54.5 NC_005882.1 + 16953 0.68 0.542923
Target:  5'- -aCAACCUG-Cag-GaUGCGACCUGGAc -3'
miRNA:   3'- gaGUUGGACaGcaaC-GCGCUGGACCU- -5'
27686 5' -54.5 NC_005882.1 + 3399 0.68 0.49931
Target:  5'- uCUCAcguugcugaacGCUUGcgcgCGggcgcUGCGCGGCCUGGGc -3'
miRNA:   3'- -GAGU-----------UGGACa---GCa----ACGCGCUGGACCU- -5'
27686 5' -54.5 NC_005882.1 + 24070 0.69 0.467648
Target:  5'- aUCGGCaagGUCGagcUGCcggGCGGCCUGGAc -3'
miRNA:   3'- gAGUUGga-CAGCa--ACG---CGCUGGACCU- -5'
27686 5' -54.5 NC_005882.1 + 16943 0.7 0.38873
Target:  5'- gUCAGCUuuugGUCGcgGC-CGGCCUGGAu -3'
miRNA:   3'- gAGUUGGa---CAGCaaCGcGCUGGACCU- -5'
27686 5' -54.5 NC_005882.1 + 27768 1.09 0.000697
Target:  5'- gCUCAACCUGUCGUUGCGCGACCUGGAg -3'
miRNA:   3'- -GAGUUGGACAGCAACGCGCUGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.