miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27687 3' -55.4 NC_005882.1 + 29780 0.67 0.55517
Target:  5'- aGGCaACGCUGcagacgaaGGCACGCGCgGC-GCu -3'
miRNA:   3'- gCUGaUGCGGC--------UUGUGCGCGaCGaCG- -5'
27687 3' -55.4 NC_005882.1 + 10789 0.67 0.55517
Target:  5'- aGGCgauCGaaGAACGCGCGCcggcgGUUGUg -3'
miRNA:   3'- gCUGau-GCggCUUGUGCGCGa----CGACG- -5'
27687 3' -55.4 NC_005882.1 + 6714 0.67 0.55517
Target:  5'- uGGCgcagcACGCCGAgacGCACGgCGC-GCcGCa -3'
miRNA:   3'- gCUGa----UGCGGCU---UGUGC-GCGaCGaCG- -5'
27687 3' -55.4 NC_005882.1 + 22876 0.67 0.544149
Target:  5'- aCGACgUACGCCGAagGCAC-CGauuacGCUGUc -3'
miRNA:   3'- -GCUG-AUGCGGCU--UGUGcGCga---CGACG- -5'
27687 3' -55.4 NC_005882.1 + 27014 0.67 0.544149
Target:  5'- gCGGCgcgcuCGUCGuuggcCGCGCGCUGCUc- -3'
miRNA:   3'- -GCUGau---GCGGCuu---GUGCGCGACGAcg -5'
27687 3' -55.4 NC_005882.1 + 16974 0.67 0.533201
Target:  5'- ---aUAUGCCGGcgugaaACGCGCGCcgGCUuGCg -3'
miRNA:   3'- gcugAUGCGGCU------UGUGCGCGa-CGA-CG- -5'
27687 3' -55.4 NC_005882.1 + 33109 0.67 0.522333
Target:  5'- gCGuACUGCgaaugcggGUCGGGCGCgGCGauaUGCUGCg -3'
miRNA:   3'- -GC-UGAUG--------CGGCUUGUG-CGCg--ACGACG- -5'
27687 3' -55.4 NC_005882.1 + 461 0.67 0.522333
Target:  5'- uGAC-ACGCCGAACuucCGUGCcaGCUcgGCa -3'
miRNA:   3'- gCUGaUGCGGCUUGu--GCGCGa-CGA--CG- -5'
27687 3' -55.4 NC_005882.1 + 16698 0.67 0.511551
Target:  5'- aGGCgACGUCG-ACGCGCGCguccGCgcagGCc -3'
miRNA:   3'- gCUGaUGCGGCuUGUGCGCGa---CGa---CG- -5'
27687 3' -55.4 NC_005882.1 + 25661 0.68 0.500863
Target:  5'- ----gGCGCCGAGcccCugGCGUUGCUcacGCa -3'
miRNA:   3'- gcugaUGCGGCUU---GugCGCGACGA---CG- -5'
27687 3' -55.4 NC_005882.1 + 5788 0.68 0.500863
Target:  5'- -cGCUAUGCagGAGCGCgGCGgggccgacCUGCUGCa -3'
miRNA:   3'- gcUGAUGCGg-CUUGUG-CGC--------GACGACG- -5'
27687 3' -55.4 NC_005882.1 + 28432 0.68 0.500863
Target:  5'- uGACcGCGUCGAcggcCACGCGCaucgcgGaCUGCg -3'
miRNA:   3'- gCUGaUGCGGCUu---GUGCGCGa-----C-GACG- -5'
27687 3' -55.4 NC_005882.1 + 24376 0.68 0.490274
Target:  5'- aGGucGCGCCGAACGCGgaGCUGaaaucgGCg -3'
miRNA:   3'- gCUgaUGCGGCUUGUGCg-CGACga----CG- -5'
27687 3' -55.4 NC_005882.1 + 6646 0.68 0.490274
Target:  5'- gCGGC-GCGCCGuGCgucucgGCGUGCUGC-GCc -3'
miRNA:   3'- -GCUGaUGCGGCuUG------UGCGCGACGaCG- -5'
27687 3' -55.4 NC_005882.1 + 3674 0.68 0.47979
Target:  5'- uCGACgcaagcgGCGUCGA---CGCGCUGC-GCa -3'
miRNA:   3'- -GCUGa------UGCGGCUuguGCGCGACGaCG- -5'
27687 3' -55.4 NC_005882.1 + 8748 0.68 0.47979
Target:  5'- gCGACgagcaGCGCCGAaacgACGCaGCGcCUGCgaaaaGCg -3'
miRNA:   3'- -GCUGa----UGCGGCU----UGUG-CGC-GACGa----CG- -5'
27687 3' -55.4 NC_005882.1 + 8944 0.68 0.469418
Target:  5'- gCGAaauCUGCGCCGAcccgGCAaaaGCGCUcGCauUGCc -3'
miRNA:   3'- -GCU---GAUGCGGCU----UGUg--CGCGA-CG--ACG- -5'
27687 3' -55.4 NC_005882.1 + 19609 0.68 0.469418
Target:  5'- -cGCUcacGCGCCu-GCGCGUcggcgaGCUGCUGCu -3'
miRNA:   3'- gcUGA---UGCGGcuUGUGCG------CGACGACG- -5'
27687 3' -55.4 NC_005882.1 + 20161 0.68 0.469418
Target:  5'- cCGccuCUACaagaCgGAACGCGCGCUGC-GCg -3'
miRNA:   3'- -GCu--GAUGc---GgCUUGUGCGCGACGaCG- -5'
27687 3' -55.4 NC_005882.1 + 31009 0.68 0.468387
Target:  5'- uCGACgcgaucCGCCGGugGgagcCGCGCUGCgaggucgUGCg -3'
miRNA:   3'- -GCUGau----GCGGCUugU----GCGCGACG-------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.