miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27687 5' -56.6 NC_005882.1 + 30054 0.66 0.499927
Target:  5'- gGGCUGCAGgucuacggcgucacCGCGaaaGGCGACGucGGCg -3'
miRNA:   3'- gCCGACGUU--------------GCGUac-CCGCUGU--UCGa -5'
27687 5' -56.6 NC_005882.1 + 27632 0.66 0.480826
Target:  5'- cCGGCgGCcGCGCGcGcGGCGACcgccgacGAGCg -3'
miRNA:   3'- -GCCGaCGuUGCGUaC-CCGCUG-------UUCGa -5'
27687 5' -56.6 NC_005882.1 + 12250 0.66 0.461056
Target:  5'- gCGGCcggUGCAugcgaGCGCAUGG-CGAUGAcGCUg -3'
miRNA:   3'- -GCCG---ACGU-----UGCGUACCcGCUGUU-CGA- -5'
27687 5' -56.6 NC_005882.1 + 29122 0.66 0.460028
Target:  5'- uGGCU-CGAUGCGUGguauccgggcaaaGGCGACGcGCUg -3'
miRNA:   3'- gCCGAcGUUGCGUAC-------------CCGCUGUuCGA- -5'
27687 5' -56.6 NC_005882.1 + 12558 0.67 0.450825
Target:  5'- gCGGCgauCGGCGCAcuGGCGGCuGGCg -3'
miRNA:   3'- -GCCGac-GUUGCGUacCCGCUGuUCGa -5'
27687 5' -56.6 NC_005882.1 + 27619 0.67 0.411198
Target:  5'- gCGGCgucccUGCAGCGCAUcaacgcagcucgGGGCGgaucGCcGGCUg -3'
miRNA:   3'- -GCCG-----ACGUUGCGUA------------CCCGC----UGuUCGA- -5'
27687 5' -56.6 NC_005882.1 + 15209 0.68 0.401634
Target:  5'- uCGGCUGC-GCGgAUGuGGuCGGgAAGCa -3'
miRNA:   3'- -GCCGACGuUGCgUAC-CC-GCUgUUCGa -5'
27687 5' -56.6 NC_005882.1 + 3268 0.68 0.401634
Target:  5'- aCGuGCUGCGcgaGCGUgcGGGCGGCGucacuguccAGCg -3'
miRNA:   3'- -GC-CGACGU---UGCGuaCCCGCUGU---------UCGa -5'
27687 5' -56.6 NC_005882.1 + 27087 0.68 0.364823
Target:  5'- gCGGCUGCu-CGCccaGGGCGGgAuGCUg -3'
miRNA:   3'- -GCCGACGuuGCGua-CCCGCUgUuCGA- -5'
27687 5' -56.6 NC_005882.1 + 1760 0.69 0.347312
Target:  5'- uCGGC-GUAuucaGCGUGGGCGcGCGGGCc -3'
miRNA:   3'- -GCCGaCGUug--CGUACCCGC-UGUUCGa -5'
27687 5' -56.6 NC_005882.1 + 11710 0.69 0.347312
Target:  5'- aGGCUGaCGAgacucaguuUGUAgaGGGCGACGGGCa -3'
miRNA:   3'- gCCGAC-GUU---------GCGUa-CCCGCUGUUCGa -5'
27687 5' -56.6 NC_005882.1 + 29840 0.69 0.330411
Target:  5'- gCGGCUcgGUcgaGAUGCG-GGGCGACAcgaAGCUg -3'
miRNA:   3'- -GCCGA--CG---UUGCGUaCCCGCUGU---UCGA- -5'
27687 5' -56.6 NC_005882.1 + 13078 0.69 0.329582
Target:  5'- gCGGCUGCGGCgGCuggcgucgacgugGUGGGCGAgGaugucguccuGGCg -3'
miRNA:   3'- -GCCGACGUUG-CG-------------UACCCGCUgU----------UCGa -5'
27687 5' -56.6 NC_005882.1 + 21883 0.7 0.298451
Target:  5'- uGGCaGCuugacGCGCAgccGGGCGACGauGGCa -3'
miRNA:   3'- gCCGaCGu----UGCGUa--CCCGCUGU--UCGa -5'
27687 5' -56.6 NC_005882.1 + 30613 0.7 0.290845
Target:  5'- gGGCgGCAugGCcggaucGGGCGGCGauGGCg -3'
miRNA:   3'- gCCGaCGUugCGua----CCCGCUGU--UCGa -5'
27687 5' -56.6 NC_005882.1 + 20783 0.7 0.283391
Target:  5'- cCGGCUGCAGCGgAacGuaGGCGAGCa -3'
miRNA:   3'- -GCCGACGUUGCgUacCcgCUGUUCGa -5'
27687 5' -56.6 NC_005882.1 + 6403 0.7 0.268939
Target:  5'- cCGGCcGCGcGCGCugccUGGGCGACA-GCc -3'
miRNA:   3'- -GCCGaCGU-UGCGu---ACCCGCUGUuCGa -5'
27687 5' -56.6 NC_005882.1 + 27084 0.71 0.261939
Target:  5'- aGGgaGCAGCGCGcGGccaaCGACGAGCg -3'
miRNA:   3'- gCCgaCGUUGCGUaCCc---GCUGUUCGa -5'
27687 5' -56.6 NC_005882.1 + 11649 0.77 0.095049
Target:  5'- uGGCUGCAACGaggAUGaucgcGGCGACGAGCc -3'
miRNA:   3'- gCCGACGUUGCg--UAC-----CCGCUGUUCGa -5'
27687 5' -56.6 NC_005882.1 + 27960 1.07 0.000507
Target:  5'- gCGGCUGCAACGCAUGGGCGACAAGCUc -3'
miRNA:   3'- -GCCGACGUUGCGUACCCGCUGUUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.