Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27688 | 3' | -49.3 | NC_005882.1 | + | 34645 | 0.66 | 0.907425 |
Target: 5'- gACUACAGgcgcGGGCgGGauggauacugGUACUGcACCg -3' miRNA: 3'- -UGAUGUU----CCCGaCCaaa-------CAUGAC-UGG- -5' |
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27688 | 3' | -49.3 | NC_005882.1 | + | 1796 | 0.67 | 0.851986 |
Target: 5'- cGCUgcGCAAGGGCgacacGGUgac-GCUGACg -3' miRNA: 3'- -UGA--UGUUCCCGa----CCAaacaUGACUGg -5' |
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27688 | 3' | -49.3 | NC_005882.1 | + | 17517 | 0.67 | 0.840835 |
Target: 5'- uACUGCAauccaAGGGCUGGUggGgaaagcaggagcACgucGACCa -3' miRNA: 3'- -UGAUGU-----UCCCGACCAaaCa-----------UGa--CUGG- -5' |
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27688 | 3' | -49.3 | NC_005882.1 | + | 3370 | 0.7 | 0.679993 |
Target: 5'- cGCUGCGcGGcCUGGgcuaccgcGUGCUGGCCg -3' miRNA: 3'- -UGAUGUuCCcGACCaaa-----CAUGACUGG- -5' |
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27688 | 3' | -49.3 | NC_005882.1 | + | 27089 | 0.7 | 0.668191 |
Target: 5'- gGCUGCucgcccAGGGC-GGgaUGcUGCUGGCCc -3' miRNA: 3'- -UGAUGu-----UCCCGaCCaaAC-AUGACUGG- -5' |
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27688 | 3' | -49.3 | NC_005882.1 | + | 10844 | 0.71 | 0.62072 |
Target: 5'- cGCUGC-GGGGCUcGUgacgGUGCUGuCCg -3' miRNA: 3'- -UGAUGuUCCCGAcCAaa--CAUGACuGG- -5' |
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27688 | 3' | -49.3 | NC_005882.1 | + | 28108 | 1.14 | 0.001097 |
Target: 5'- gACUACAAGGGCUGGUUUGUACUGACCg -3' miRNA: 3'- -UGAUGUUCCCGACCAAACAUGACUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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