Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
27688 | 5' | -49.8 | NC_005882.1 | + | 12782 | 0.68 | 0.784753 |
Target: 5'- gUCG-CCGGCGAGCGccGCCGcGCgcuGCGUCu -3' miRNA: 3'- -AGCuGGUCGUUUGUu-UGGC-UG---UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 11154 | 0.68 | 0.815586 |
Target: 5'- cCGACCuuuGCGAGCuGAUCGucCGCGUa -3' miRNA: 3'- aGCUGGu--CGUUUGuUUGGCu-GUGCAg -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 6920 | 0.68 | 0.784753 |
Target: 5'- uUCGGgaAGCAcgugAACAAGCCGccgcgcaaACGCGUCu -3' miRNA: 3'- -AGCUggUCGU----UUGUUUGGC--------UGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 15659 | 0.68 | 0.805511 |
Target: 5'- aUGACCuguacGGCGcGCAGGuCCGcgaGCACGUCg -3' miRNA: 3'- aGCUGG-----UCGUuUGUUU-GGC---UGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 3633 | 0.68 | 0.79523 |
Target: 5'- aUGACCAGCAcGCGAcgcgaucguGCCGAaACGg- -3' miRNA: 3'- aGCUGGUCGUuUGUU---------UGGCUgUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 21231 | 0.68 | 0.773021 |
Target: 5'- gCGGCCGGCcaagccauuccgaAGGC-AACCGGCGCaUCg -3' miRNA: 3'- aGCUGGUCG-------------UUUGuUUGGCUGUGcAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 15587 | 0.68 | 0.774096 |
Target: 5'- cCGACguGCucGCGGACCuGCGCGcCg -3' miRNA: 3'- aGCUGguCGuuUGUUUGGcUGUGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 10396 | 0.68 | 0.784753 |
Target: 5'- aCGACgcaAGCAcuGACGAGCCGGC-CGg- -3' miRNA: 3'- aGCUGg--UCGU--UUGUUUGGCUGuGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 12320 | 0.68 | 0.784753 |
Target: 5'- gCGAUCAGCGcguGACGGcuGCCGGCgGCGcCg -3' miRNA: 3'- aGCUGGUCGU---UUGUU--UGGCUG-UGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 11746 | 0.68 | 0.784753 |
Target: 5'- cCGACUGGCGgcauggaccgGACGGACUGACGCc-- -3' miRNA: 3'- aGCUGGUCGU----------UUGUUUGGCUGUGcag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 25905 | 0.68 | 0.79523 |
Target: 5'- aCGGCCA-CGAAC--GCCGACAUGa- -3' miRNA: 3'- aGCUGGUcGUUUGuuUGGCUGUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 4862 | 0.68 | 0.815586 |
Target: 5'- cUCGAUCAGCGA---GAgCGGCGCGa- -3' miRNA: 3'- -AGCUGGUCGUUuguUUgGCUGUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 4722 | 0.69 | 0.729932 |
Target: 5'- -gGGCCGGUAAGCucGgCGACgaucGCGUCg -3' miRNA: 3'- agCUGGUCGUUUGuuUgGCUG----UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 7342 | 0.69 | 0.752293 |
Target: 5'- gUCGACCAuuGCGGGCAugcCCGGaacaucgGCGUCg -3' miRNA: 3'- -AGCUGGU--CGUUUGUuu-GGCUg------UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 33151 | 0.69 | 0.71515 |
Target: 5'- cCGACCAGUucGGCAAGCCuugccgcgagguccGACuuCGUCg -3' miRNA: 3'- aGCUGGUCGu-UUGUUUGG--------------CUGu-GCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 10923 | 0.69 | 0.718576 |
Target: 5'- aCGACCAgguugaucGCGGACAGcACCGuCACGa- -3' miRNA: 3'- aGCUGGU--------CGUUUGUU-UGGCuGUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 31961 | 0.69 | 0.741175 |
Target: 5'- cCGACgAGCGucGGCGgccgcuGACCGAuUACGUCg -3' miRNA: 3'- aGCUGgUCGU--UUGU------UUGGCU-GUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 17882 | 0.69 | 0.741175 |
Target: 5'- gCGGCCGGCGAcCGccUCGGCACGa- -3' miRNA: 3'- aGCUGGUCGUUuGUuuGGCUGUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 675 | 0.69 | 0.752293 |
Target: 5'- cCGACCAgGCGAACcAGCUcgGGCGCGa- -3' miRNA: 3'- aGCUGGU-CGUUUGuUUGG--CUGUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 23244 | 0.69 | 0.729932 |
Target: 5'- -gGGCCGGCGGGCAcgaucAACUucaACACGUCc -3' miRNA: 3'- agCUGGUCGUUUGU-----UUGGc--UGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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