Results 101 - 119 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27688 | 5' | -49.8 | NC_005882.1 | + | 32347 | 0.73 | 0.521127 |
Target: 5'- gUUGGCCgAGCGccucGACAAcAUCGACAUGUCg -3' miRNA: 3'- -AGCUGG-UCGU----UUGUU-UGGCUGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 15267 | 0.73 | 0.521127 |
Target: 5'- gUCGACCGGgAgcgccgugagcAGCGGGCCGA-GCGUCg -3' miRNA: 3'- -AGCUGGUCgU-----------UUGUUUGGCUgUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 17278 | 0.73 | 0.521127 |
Target: 5'- -aGAUCGcGCGGGCAAGCCGuuccugcaGCGCGUCc -3' miRNA: 3'- agCUGGU-CGUUUGUUUGGC--------UGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 23753 | 0.74 | 0.431481 |
Target: 5'- cUCGACgAGCGAGuCGaucagcccuuggucGAUCGGCGCGUCg -3' miRNA: 3'- -AGCUGgUCGUUU-GU--------------UUGGCUGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 15336 | 0.74 | 0.466103 |
Target: 5'- uUCGAUCAGCGGcACGugGACCGuCAgGUCg -3' miRNA: 3'- -AGCUGGUCGUU-UGU--UUGGCuGUgCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 17958 | 0.74 | 0.455457 |
Target: 5'- gUUGACCAGCuuGAGCGucguGCCGAgGCGgUCg -3' miRNA: 3'- -AGCUGGUCG--UUUGUu---UGGCUgUGC-AG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 22724 | 0.74 | 0.443899 |
Target: 5'- aUCGugaaGCCGGCGAgcuGCGGGCCGAacugcgcCGCGUCg -3' miRNA: 3'- -AGC----UGGUCGUU---UGUUUGGCU-------GUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 27134 | 0.74 | 0.434567 |
Target: 5'- gCGAgCAGCcgcAGCGGGCCGAUaaACGUCa -3' miRNA: 3'- aGCUgGUCGu--UUGUUUGGCUG--UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 27200 | 0.74 | 0.434567 |
Target: 5'- cCGGCCAGCAu-CAGGCCGuuCACGa- -3' miRNA: 3'- aGCUGGUCGUuuGUUUGGCu-GUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 22246 | 0.74 | 0.466103 |
Target: 5'- aUCGugaaauACCAGUAcAGCGGACCGACcagcgGCGUCa -3' miRNA: 3'- -AGC------UGGUCGU-UUGUUUGGCUG-----UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 16893 | 0.74 | 0.444943 |
Target: 5'- gCGACCaaaAGCugacGCAAGCCGGCGCG-Cg -3' miRNA: 3'- aGCUGG---UCGuu--UGUUUGGCUGUGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 16515 | 0.75 | 0.414243 |
Target: 5'- cCGACCAGCAucGGCGAACCG-UACuUCu -3' miRNA: 3'- aGCUGGUCGU--UUGUUUGGCuGUGcAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 14354 | 0.76 | 0.339104 |
Target: 5'- cCGuAUCAGCAGAaauggugcGCCGACACGUCg -3' miRNA: 3'- aGC-UGGUCGUUUguu-----UGGCUGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 16443 | 0.76 | 0.375405 |
Target: 5'- gUCGGCCAG-AAGCAcAUCGACAgGUCc -3' miRNA: 3'- -AGCUGGUCgUUUGUuUGGCUGUgCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 16282 | 0.77 | 0.330436 |
Target: 5'- gUCGGCCGGCuu----GCCGACgACGUCg -3' miRNA: 3'- -AGCUGGUCGuuuguuUGGCUG-UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 16220 | 0.78 | 0.289562 |
Target: 5'- aUCGACgucguCGGCAAGCcGGCCGACugGUUc -3' miRNA: 3'- -AGCUG-----GUCGUUUGuUUGGCUGugCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 5869 | 0.78 | 0.289562 |
Target: 5'- cCGACCAcGCGAGCGAcuggauuuacACCGAgUACGUCa -3' miRNA: 3'- aGCUGGU-CGUUUGUU----------UGGCU-GUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 19037 | 0.8 | 0.207219 |
Target: 5'- gUCGGCCGGCAAccuGCAGGCCGAacccaccCAgGUCg -3' miRNA: 3'- -AGCUGGUCGUU---UGUUUGGCU-------GUgCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 28143 | 1.12 | 0.001444 |
Target: 5'- gUCGACCAGCAAACAAACCGACACGUCg -3' miRNA: 3'- -AGCUGGUCGUUUGUUUGGCUGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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