miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 33151 0.69 0.71515
Target:  5'- cCGACCAGUucGGCAAGCCuugccgcgagguccGACuuCGUCg -3'
miRNA:   3'- aGCUGGUCGu-UUGUUUGG--------------CUGu-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 18475 0.69 0.718576
Target:  5'- -aGuuCGGCGGGCAAGCCGGuCGCGg- -3'
miRNA:   3'- agCugGUCGUUUGUUUGGCU-GUGCag -5'
27688 5' -49.8 NC_005882.1 + 5157 0.69 0.718576
Target:  5'- gUGAUCGGCGAaagcuaccggcgGCAcGCCGAUACGcCa -3'
miRNA:   3'- aGCUGGUCGUU------------UGUuUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 9797 0.69 0.729932
Target:  5'- gCGACCAGCAAcGCucccgauuGAGCCGGCcCGg- -3'
miRNA:   3'- aGCUGGUCGUU-UG--------UUUGGCUGuGCag -5'
27688 5' -49.8 NC_005882.1 + 8119 0.69 0.729932
Target:  5'- cUCGGCCAauGCAGACGAAaCGAuCGCGa- -3'
miRNA:   3'- -AGCUGGU--CGUUUGUUUgGCU-GUGCag -5'
27688 5' -49.8 NC_005882.1 + 942 0.69 0.741175
Target:  5'- cUGGCUugAGCuGGCGGAUCGGgGCGUCg -3'
miRNA:   3'- aGCUGG--UCGuUUGUUUGGCUgUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 31947 0.69 0.741175
Target:  5'- gUCGACgAGCGggUAGACCugGACGCu-- -3'
miRNA:   3'- -AGCUGgUCGUuuGUUUGG--CUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 21231 0.68 0.773021
Target:  5'- gCGGCCGGCcaagccauuccgaAGGC-AACCGGCGCaUCg -3'
miRNA:   3'- aGCUGGUCG-------------UUUGuUUGGCUGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 4862 0.68 0.815586
Target:  5'- cUCGAUCAGCGA---GAgCGGCGCGa- -3'
miRNA:   3'- -AGCUGGUCGUUuguUUgGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 25905 0.68 0.79523
Target:  5'- aCGGCCA-CGAAC--GCCGACAUGa- -3'
miRNA:   3'- aGCUGGUcGUUUGuuUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 11746 0.68 0.784753
Target:  5'- cCGACUGGCGgcauggaccgGACGGACUGACGCc-- -3'
miRNA:   3'- aGCUGGUCGU----------UUGUUUGGCUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 12320 0.68 0.784753
Target:  5'- gCGAUCAGCGcguGACGGcuGCCGGCgGCGcCg -3'
miRNA:   3'- aGCUGGUCGU---UUGUU--UGGCUG-UGCaG- -5'
27688 5' -49.8 NC_005882.1 + 10396 0.68 0.784753
Target:  5'- aCGACgcaAGCAcuGACGAGCCGGC-CGg- -3'
miRNA:   3'- aGCUGg--UCGU--UUGUUUGGCUGuGCag -5'
27688 5' -49.8 NC_005882.1 + 15587 0.68 0.774096
Target:  5'- cCGACguGCucGCGGACCuGCGCGcCg -3'
miRNA:   3'- aGCUGguCGuuUGUUUGGcUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 34056 0.68 0.784753
Target:  5'- cCGuACUGGCuAAACAAcucACCGGcCACGUCc -3'
miRNA:   3'- aGC-UGGUCG-UUUGUU---UGGCU-GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 3633 0.68 0.79523
Target:  5'- aUGACCAGCAcGCGAcgcgaucguGCCGAaACGg- -3'
miRNA:   3'- aGCUGGUCGUuUGUU---------UGGCUgUGCag -5'
27688 5' -49.8 NC_005882.1 + 12782 0.68 0.784753
Target:  5'- gUCG-CCGGCGAGCGccGCCGcGCgcuGCGUCu -3'
miRNA:   3'- -AGCuGGUCGUUUGUu-UGGC-UG---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 1281 0.68 0.784753
Target:  5'- cCG-CCGGUAGAUGGAUCGagcggccuGCGCGUCg -3'
miRNA:   3'- aGCuGGUCGUUUGUUUGGC--------UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 12341 0.68 0.79523
Target:  5'- -aGGCC-GCcguuAUAGGCCGACAgCGUCa -3'
miRNA:   3'- agCUGGuCGuu--UGUUUGGCUGU-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 6920 0.68 0.784753
Target:  5'- uUCGGgaAGCAcgugAACAAGCCGccgcgcaaACGCGUCu -3'
miRNA:   3'- -AGCUggUCGU----UUGUUUGGC--------UGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.