Results 81 - 100 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27688 | 5' | -49.8 | NC_005882.1 | + | 4862 | 0.68 | 0.815586 |
Target: 5'- cUCGAUCAGCGA---GAgCGGCGCGa- -3' miRNA: 3'- -AGCUGGUCGUUuguUUgGCUGUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 1281 | 0.68 | 0.784753 |
Target: 5'- cCG-CCGGUAGAUGGAUCGagcggccuGCGCGUCg -3' miRNA: 3'- aGCuGGUCGUUUGUUUGGC--------UGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 11154 | 0.68 | 0.815586 |
Target: 5'- cCGACCuuuGCGAGCuGAUCGucCGCGUa -3' miRNA: 3'- aGCUGGu--CGUUUGuUUGGCu-GUGCAg -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 2826 | 0.68 | 0.812586 |
Target: 5'- uUCGACCuGGCGgcgcgaagcaauacGACGuAGCUGGCGCGaUCg -3' miRNA: 3'- -AGCUGG-UCGU--------------UUGU-UUGGCUGUGC-AG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 29536 | 0.67 | 0.853565 |
Target: 5'- gCGGuCCAGCAguucaAGCGcGCCGACuugaaGUCg -3' miRNA: 3'- aGCU-GGUCGU-----UUGUuUGGCUGug---CAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 18322 | 0.67 | 0.82544 |
Target: 5'- -aGAaaaaCGGCGAGCuGACCGcggcCGCGUCg -3' miRNA: 3'- agCUg---GUCGUUUGuUUGGCu---GUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 11402 | 0.67 | 0.853565 |
Target: 5'- gUCGAuccaaCCAGCGAGCAAcgCGAUugcauCGUCg -3' miRNA: 3'- -AGCU-----GGUCGUUUGUUugGCUGu----GCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 9500 | 0.67 | 0.82544 |
Target: 5'- gCGcGCUGGCGGccGCAAGCaCGACGCGcCa -3' miRNA: 3'- aGC-UGGUCGUU--UGUUUG-GCUGUGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 3316 | 0.67 | 0.844441 |
Target: 5'- gCGGCCGGCcGACGauccaGAUCGGCcCGUa -3' miRNA: 3'- aGCUGGUCGuUUGU-----UUGGCUGuGCAg -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 5241 | 0.67 | 0.82544 |
Target: 5'- cUGACUGGCGagGACGGGCgCGAgACGUa -3' miRNA: 3'- aGCUGGUCGU--UUGUUUG-GCUgUGCAg -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 21960 | 0.67 | 0.82544 |
Target: 5'- cUGACCAGC-AACGcGCCGAuCGCa-- -3' miRNA: 3'- aGCUGGUCGuUUGUuUGGCU-GUGcag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 3300 | 0.67 | 0.835062 |
Target: 5'- uUCGGCCAGCAcGCGguagcccaGGCCG-CGCa-- -3' miRNA: 3'- -AGCUGGUCGUuUGU--------UUGGCuGUGcag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 5261 | 0.67 | 0.844441 |
Target: 5'- cCGACCAugacGCccGGCAccgaCGACACGUCg -3' miRNA: 3'- aGCUGGU----CGu-UUGUuug-GCUGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 28487 | 0.67 | 0.844441 |
Target: 5'- cUCGACgAGCGAcucaaugcuGCGAACgGAU-CGUCu -3' miRNA: 3'- -AGCUGgUCGUU---------UGUUUGgCUGuGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 33083 | 0.67 | 0.862424 |
Target: 5'- -gGACCucgcGGCAAgGCuuGCCGaACugGUCg -3' miRNA: 3'- agCUGG----UCGUU-UGuuUGGC-UGugCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 24615 | 0.67 | 0.853565 |
Target: 5'- cCGGCCAGaCGcuCAcggAACUGACguuGCGUCg -3' miRNA: 3'- aGCUGGUC-GUuuGU---UUGGCUG---UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 19935 | 0.67 | 0.841654 |
Target: 5'- gCGGCC-GCGAACGcggugauccguuauAACCGGCGCa-- -3' miRNA: 3'- aGCUGGuCGUUUGU--------------UUGGCUGUGcag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 26157 | 0.66 | 0.902449 |
Target: 5'- gCG-CCGGCAGugGCGAcgaaGCCGugACGa- -3' miRNA: 3'- aGCuGGUCGUU--UGUU----UGGCugUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 1898 | 0.66 | 0.902449 |
Target: 5'- gCGGCCAGCGAAaguGCuCGAugucgcgguuaCGCGUUg -3' miRNA: 3'- aGCUGGUCGUUUguuUG-GCU-----------GUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 18406 | 0.66 | 0.902449 |
Target: 5'- -aGACCGGCcuuGCGAcgCGACGCGg- -3' miRNA: 3'- agCUGGUCGuu-UGUUugGCUGUGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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