Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27688 | 5' | -49.8 | NC_005882.1 | + | 29244 | 0.7 | 0.665297 |
Target: 5'- gCGGCCGcacGCGAGCAAcggcgcgccggcguaGCCGAUcuucaGCGUCa -3' miRNA: 3'- aGCUGGU---CGUUUGUU---------------UGGCUG-----UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 19097 | 0.7 | 0.672316 |
Target: 5'- uUCGGCCuGCAGguuGCcGGCCGACGCc-- -3' miRNA: 3'- -AGCUGGuCGUU---UGuUUGGCUGUGcag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 23192 | 0.7 | 0.672316 |
Target: 5'- cUCGACCGagaccgaguucuGCGuGCAGuacGCCGGCGCGaUCa -3' miRNA: 3'- -AGCUGGU------------CGUuUGUU---UGGCUGUGC-AG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 21282 | 0.7 | 0.672316 |
Target: 5'- cUCGAUgCGGCGAcgGC-GGCCGGCgACGUCa -3' miRNA: 3'- -AGCUG-GUCGUU--UGuUUGGCUG-UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 21410 | 0.7 | 0.68398 |
Target: 5'- aCGGCCAGCuu-CAggUCGGCgaGCGUg -3' miRNA: 3'- aGCUGGUCGuuuGUuuGGCUG--UGCAg -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 12435 | 0.7 | 0.68398 |
Target: 5'- cCGGCCGGCGuugaaccgcucGACAuGGCCGAaccaGCGUUg -3' miRNA: 3'- aGCUGGUCGU-----------UUGU-UUGGCUg---UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 22798 | 0.7 | 0.68398 |
Target: 5'- aCGGCCGGguCGAGCAcGuuGACACGaUCa -3' miRNA: 3'- aGCUGGUC--GUUUGUuUggCUGUGC-AG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 17928 | 0.7 | 0.68863 |
Target: 5'- -aGACCGGCGAGCu-GCgCGaggucgcgacguuccGCACGUCg -3' miRNA: 3'- agCUGGUCGUUUGuuUG-GC---------------UGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 32440 | 0.7 | 0.695587 |
Target: 5'- aUCGAUCAgGUAGACcagGAGCggCGACAUGUCg -3' miRNA: 3'- -AGCUGGU-CGUUUG---UUUG--GCUGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 12546 | 0.7 | 0.70367 |
Target: 5'- gCGGCCGGCGcugcGGCGAucggcgcacuggcgGCUGGCGCGgUCg -3' miRNA: 3'- aGCUGGUCGU----UUGUU--------------UGGCUGUGC-AG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 17159 | 0.7 | 0.707123 |
Target: 5'- gCGACCAGCGccuGCGcgUCGGCAUucagGUCg -3' miRNA: 3'- aGCUGGUCGUu--UGUuuGGCUGUG----CAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 27011 | 0.7 | 0.707123 |
Target: 5'- aCGGCC-GCGAACuuGCCGGcCGCGcCc -3' miRNA: 3'- aGCUGGuCGUUUGuuUGGCU-GUGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 33151 | 0.69 | 0.71515 |
Target: 5'- cCGACCAGUucGGCAAGCCuugccgcgagguccGACuuCGUCg -3' miRNA: 3'- aGCUGGUCGu-UUGUUUGG--------------CUGu-GCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 18475 | 0.69 | 0.718576 |
Target: 5'- -aGuuCGGCGGGCAAGCCGGuCGCGg- -3' miRNA: 3'- agCugGUCGUUUGUUUGGCU-GUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 10923 | 0.69 | 0.718576 |
Target: 5'- aCGACCAgguugaucGCGGACAGcACCGuCACGa- -3' miRNA: 3'- aGCUGGU--------CGUUUGUU-UGGCuGUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 5157 | 0.69 | 0.718576 |
Target: 5'- gUGAUCGGCGAaagcuaccggcgGCAcGCCGAUACGcCa -3' miRNA: 3'- aGCUGGUCGUU------------UGUuUGGCUGUGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 23244 | 0.69 | 0.729932 |
Target: 5'- -gGGCCGGCGGGCAcgaucAACUucaACACGUCc -3' miRNA: 3'- agCUGGUCGUUUGU-----UUGGc--UGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 8119 | 0.69 | 0.729932 |
Target: 5'- cUCGGCCAauGCAGACGAAaCGAuCGCGa- -3' miRNA: 3'- -AGCUGGU--CGUUUGUUUgGCU-GUGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 9797 | 0.69 | 0.729932 |
Target: 5'- gCGACCAGCAAcGCucccgauuGAGCCGGCcCGg- -3' miRNA: 3'- aGCUGGUCGUU-UG--------UUUGGCUGuGCag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 4722 | 0.69 | 0.729932 |
Target: 5'- -gGGCCGGUAAGCucGgCGACgaucGCGUCg -3' miRNA: 3'- agCUGGUCGUUUGuuUgGCUG----UGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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