miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 942 0.69 0.741175
Target:  5'- cUGGCUugAGCuGGCGGAUCGGgGCGUCg -3'
miRNA:   3'- aGCUGG--UCGuUUGUUUGGCUgUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 31947 0.69 0.741175
Target:  5'- gUCGACgAGCGggUAGACCugGACGCu-- -3'
miRNA:   3'- -AGCUGgUCGUuuGUUUGG--CUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 31961 0.69 0.741175
Target:  5'- cCGACgAGCGucGGCGgccgcuGACCGAuUACGUCg -3'
miRNA:   3'- aGCUGgUCGU--UUGU------UUGGCU-GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 17882 0.69 0.741175
Target:  5'- gCGGCCGGCGAcCGccUCGGCACGa- -3'
miRNA:   3'- aGCUGGUCGUUuGUuuGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 675 0.69 0.752293
Target:  5'- cCGACCAgGCGAACcAGCUcgGGCGCGa- -3'
miRNA:   3'- aGCUGGU-CGUUUGuUUGG--CUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 7342 0.69 0.752293
Target:  5'- gUCGACCAuuGCGGGCAugcCCGGaacaucgGCGUCg -3'
miRNA:   3'- -AGCUGGU--CGUUUGUuu-GGCUg------UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21141 0.69 0.763272
Target:  5'- gUCGGCgAGCAAGCGccggucAACCuGCucgGCGUCa -3'
miRNA:   3'- -AGCUGgUCGUUUGU------UUGGcUG---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21231 0.68 0.773021
Target:  5'- gCGGCCGGCcaagccauuccgaAGGC-AACCGGCGCaUCg -3'
miRNA:   3'- aGCUGGUCG-------------UUUGuUUGGCUGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 15587 0.68 0.774096
Target:  5'- cCGACguGCucGCGGACCuGCGCGcCg -3'
miRNA:   3'- aGCUGguCGuuUGUUUGGcUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 10396 0.68 0.784753
Target:  5'- aCGACgcaAGCAcuGACGAGCCGGC-CGg- -3'
miRNA:   3'- aGCUGg--UCGU--UUGUUUGGCUGuGCag -5'
27688 5' -49.8 NC_005882.1 + 12320 0.68 0.784753
Target:  5'- gCGAUCAGCGcguGACGGcuGCCGGCgGCGcCg -3'
miRNA:   3'- aGCUGGUCGU---UUGUU--UGGCUG-UGCaG- -5'
27688 5' -49.8 NC_005882.1 + 34056 0.68 0.784753
Target:  5'- cCGuACUGGCuAAACAAcucACCGGcCACGUCc -3'
miRNA:   3'- aGC-UGGUCG-UUUGUU---UGGCU-GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 6920 0.68 0.784753
Target:  5'- uUCGGgaAGCAcgugAACAAGCCGccgcgcaaACGCGUCu -3'
miRNA:   3'- -AGCUggUCGU----UUGUUUGGC--------UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 12782 0.68 0.784753
Target:  5'- gUCG-CCGGCGAGCGccGCCGcGCgcuGCGUCu -3'
miRNA:   3'- -AGCuGGUCGUUUGUu-UGGC-UG---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 1281 0.68 0.784753
Target:  5'- cCG-CCGGUAGAUGGAUCGagcggccuGCGCGUCg -3'
miRNA:   3'- aGCuGGUCGUUUGUUUGGC--------UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 11746 0.68 0.784753
Target:  5'- cCGACUGGCGgcauggaccgGACGGACUGACGCc-- -3'
miRNA:   3'- aGCUGGUCGU----------UUGUUUGGCUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 12341 0.68 0.79523
Target:  5'- -aGGCC-GCcguuAUAGGCCGACAgCGUCa -3'
miRNA:   3'- agCUGGuCGuu--UGUUUGGCUGU-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 25905 0.68 0.79523
Target:  5'- aCGGCCA-CGAAC--GCCGACAUGa- -3'
miRNA:   3'- aGCUGGUcGUUUGuuUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 3633 0.68 0.79523
Target:  5'- aUGACCAGCAcGCGAcgcgaucguGCCGAaACGg- -3'
miRNA:   3'- aGCUGGUCGUuUGUU---------UGGCUgUGCag -5'
27688 5' -49.8 NC_005882.1 + 16767 0.68 0.805511
Target:  5'- cCGGCCuGC--GCGGACgCG-CGCGUCg -3'
miRNA:   3'- aGCUGGuCGuuUGUUUG-GCuGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.