miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 13255 0.72 0.566887
Target:  5'- aUCaGCCGGCAGGCGGACaacaCGGCGCGcCu -3'
miRNA:   3'- -AGcUGGUCGUUUGUUUG----GCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 13948 0.71 0.648872
Target:  5'- gCGAUCaaGGCGAGCAcggaAGCCGACGCaUCc -3'
miRNA:   3'- aGCUGG--UCGUUUGU----UUGGCUGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 14354 0.76 0.339104
Target:  5'- cCGuAUCAGCAGAaauggugcGCCGACACGUCg -3'
miRNA:   3'- aGC-UGGUCGUUUguu-----UGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 15267 0.73 0.521127
Target:  5'- gUCGACCGGgAgcgccgugagcAGCGGGCCGA-GCGUCg -3'
miRNA:   3'- -AGCUGGUCgU-----------UUGUUUGGCUgUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 15336 0.74 0.466103
Target:  5'- uUCGAUCAGCGGcACGugGACCGuCAgGUCg -3'
miRNA:   3'- -AGCUGGUCGUU-UGU--UUGGCuGUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 15587 0.68 0.774096
Target:  5'- cCGACguGCucGCGGACCuGCGCGcCg -3'
miRNA:   3'- aGCUGguCGuuUGUUUGGcUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 15659 0.68 0.805511
Target:  5'- aUGACCuguacGGCGcGCAGGuCCGcgaGCACGUCg -3'
miRNA:   3'- aGCUGG-----UCGUuUGUUU-GGC---UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 15981 0.66 0.902449
Target:  5'- gCGAgCuGCGcGCGGACgCG-CACGUCg -3'
miRNA:   3'- aGCUgGuCGUuUGUUUG-GCuGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 16220 0.78 0.289562
Target:  5'- aUCGACgucguCGGCAAGCcGGCCGACugGUUc -3'
miRNA:   3'- -AGCUG-----GUCGUUUGuUUGGCUGugCAG- -5'
27688 5' -49.8 NC_005882.1 + 16282 0.77 0.330436
Target:  5'- gUCGGCCGGCuu----GCCGACgACGUCg -3'
miRNA:   3'- -AGCUGGUCGuuuguuUGGCUG-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 16443 0.76 0.375405
Target:  5'- gUCGGCCAG-AAGCAcAUCGACAgGUCc -3'
miRNA:   3'- -AGCUGGUCgUUUGUuUGGCUGUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 16515 0.75 0.414243
Target:  5'- cCGACCAGCAucGGCGAACCG-UACuUCu -3'
miRNA:   3'- aGCUGGUCGU--UUGUUUGGCuGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 16767 0.68 0.805511
Target:  5'- cCGGCCuGC--GCGGACgCG-CGCGUCg -3'
miRNA:   3'- aGCUGGuCGuuUGUUUG-GCuGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 16893 0.74 0.444943
Target:  5'- gCGACCaaaAGCugacGCAAGCCGGCGCG-Cg -3'
miRNA:   3'- aGCUGG---UCGuu--UGUUUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 17159 0.7 0.707123
Target:  5'- gCGACCAGCGccuGCGcgUCGGCAUucagGUCg -3'
miRNA:   3'- aGCUGGUCGUu--UGUuuGGCUGUG----CAG- -5'
27688 5' -49.8 NC_005882.1 + 17223 0.7 0.660609
Target:  5'- cUCGGCCAGCAu----GCCGAgCAgcuCGUCg -3'
miRNA:   3'- -AGCUGGUCGUuuguuUGGCU-GU---GCAG- -5'
27688 5' -49.8 NC_005882.1 + 17278 0.73 0.521127
Target:  5'- -aGAUCGcGCGGGCAAGCCGuuccugcaGCGCGUCc -3'
miRNA:   3'- agCUGGU-CGUUUGUUUGGC--------UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 17882 0.69 0.741175
Target:  5'- gCGGCCGGCGAcCGccUCGGCACGa- -3'
miRNA:   3'- aGCUGGUCGUUuGUuuGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 17928 0.7 0.68863
Target:  5'- -aGACCGGCGAGCu-GCgCGaggucgcgacguuccGCACGUCg -3'
miRNA:   3'- agCUGGUCGUUUGuuUG-GC---------------UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 17958 0.74 0.455457
Target:  5'- gUUGACCAGCuuGAGCGucguGCCGAgGCGgUCg -3'
miRNA:   3'- -AGCUGGUCG--UUUGUu---UGGCUgUGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.