miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 18265 0.66 0.895038
Target:  5'- gUGACCAGCAccAGC--GCCuGCGCGaUCu -3'
miRNA:   3'- aGCUGGUCGU--UUGuuUGGcUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 18322 0.67 0.82544
Target:  5'- -aGAaaaaCGGCGAGCuGACCGcggcCGCGUCg -3'
miRNA:   3'- agCUg---GUCGUUUGuUUGGCu---GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 18406 0.66 0.902449
Target:  5'- -aGACCGGCcuuGCGAcgCGACGCGg- -3'
miRNA:   3'- agCUGGUCGuu-UGUUugGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 18475 0.69 0.718576
Target:  5'- -aGuuCGGCGGGCAAGCCGGuCGCGg- -3'
miRNA:   3'- agCugGUCGUUUGUUUGGCU-GUGCag -5'
27688 5' -49.8 NC_005882.1 + 18533 0.71 0.601871
Target:  5'- gCGACCGGCuuGCccGCCGaACugGUg -3'
miRNA:   3'- aGCUGGUCGuuUGuuUGGC-UGugCAg -5'
27688 5' -49.8 NC_005882.1 + 18872 0.72 0.578502
Target:  5'- -gGGCaGGCAcGCAGACCGACAUGa- -3'
miRNA:   3'- agCUGgUCGUuUGUUUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 19037 0.8 0.207219
Target:  5'- gUCGGCCGGCAAccuGCAGGCCGAacccaccCAgGUCg -3'
miRNA:   3'- -AGCUGGUCGUU---UGUUUGGCU-------GUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 19060 0.73 0.532445
Target:  5'- gCGAcCCAGCcc-CAcGCCGGCGCGUUg -3'
miRNA:   3'- aGCU-GGUCGuuuGUuUGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 19097 0.7 0.672316
Target:  5'- uUCGGCCuGCAGguuGCcGGCCGACGCc-- -3'
miRNA:   3'- -AGCUGGuCGUU---UGuUUGGCUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 19422 0.72 0.590166
Target:  5'- cCGACCAGCGcAUucGCCGaACGCGg- -3'
miRNA:   3'- aGCUGGUCGUuUGuuUGGC-UGUGCag -5'
27688 5' -49.8 NC_005882.1 + 19811 0.72 0.566887
Target:  5'- gCGcGCCGGCGugacGACGAcgggcGCCGACACcGUCg -3'
miRNA:   3'- aGC-UGGUCGU----UUGUU-----UGGCUGUG-CAG- -5'
27688 5' -49.8 NC_005882.1 + 19935 0.67 0.841654
Target:  5'- gCGGCC-GCGAACGcggugauccguuauAACCGGCGCa-- -3'
miRNA:   3'- aGCUGGuCGUUUGU--------------UUGGCUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 20145 0.71 0.635942
Target:  5'- aCGACCGGCAucaGGCucuGGCCGAUgaauucgGCGUUc -3'
miRNA:   3'- aGCUGGUCGU---UUGu--UUGGCUG-------UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 20444 0.71 0.625358
Target:  5'- gCGGCCGGC-AGCGAuCCGGuCgGCGUCa -3'
miRNA:   3'- aGCUGGUCGuUUGUUuGGCU-G-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21072 0.66 0.887323
Target:  5'- gUCGGCUucgaugguGGCGuguGCGcAGCCGGCGCGa- -3'
miRNA:   3'- -AGCUGG--------UCGUu--UGU-UUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 21141 0.69 0.763272
Target:  5'- gUCGGCgAGCAAGCGccggucAACCuGCucgGCGUCa -3'
miRNA:   3'- -AGCUGgUCGUUUGU------UUGGcUG---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21200 0.72 0.54385
Target:  5'- gUUGACCGGCGcuuGCucGCCGACAUcggcgGUCg -3'
miRNA:   3'- -AGCUGGUCGUu--UGuuUGGCUGUG-----CAG- -5'
27688 5' -49.8 NC_005882.1 + 21231 0.68 0.773021
Target:  5'- gCGGCCGGCcaagccauuccgaAGGC-AACCGGCGCaUCg -3'
miRNA:   3'- aGCUGGUCG-------------UUUGuUUGGCUGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 21282 0.7 0.672316
Target:  5'- cUCGAUgCGGCGAcgGC-GGCCGGCgACGUCa -3'
miRNA:   3'- -AGCUG-GUCGUU--UGuUUGGCUG-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21410 0.7 0.68398
Target:  5'- aCGGCCAGCuu-CAggUCGGCgaGCGUg -3'
miRNA:   3'- aGCUGGUCGuuuGUuuGGCUG--UGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.