miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 27134 0.74 0.434567
Target:  5'- gCGAgCAGCcgcAGCGGGCCGAUaaACGUCa -3'
miRNA:   3'- aGCUgGUCGu--UUGUUUGGCUG--UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 27011 0.7 0.707123
Target:  5'- aCGGCC-GCGAACuuGCCGGcCGCGcCc -3'
miRNA:   3'- aGCUGGuCGUUUGuuUGGCU-GUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 26157 0.66 0.902449
Target:  5'- gCG-CCGGCAGugGCGAcgaaGCCGugACGa- -3'
miRNA:   3'- aGCuGGUCGUU--UGUU----UGGCugUGCag -5'
27688 5' -49.8 NC_005882.1 + 25905 0.68 0.79523
Target:  5'- aCGGCCA-CGAAC--GCCGACAUGa- -3'
miRNA:   3'- aGCUGGUcGUUUGuuUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 25881 0.66 0.902449
Target:  5'- gCGACCAGUGu----GCCGACGCcuUCg -3'
miRNA:   3'- aGCUGGUCGUuuguuUGGCUGUGc-AG- -5'
27688 5' -49.8 NC_005882.1 + 25870 0.66 0.887323
Target:  5'- cCGGCCAGaaauCGAACCugcucgGGCGCGUg -3'
miRNA:   3'- aGCUGGUCguuuGUUUGG------CUGUGCAg -5'
27688 5' -49.8 NC_005882.1 + 25407 0.66 0.879312
Target:  5'- cUCGGCCGcgucGCcGACGAGCUGcGCGCGa- -3'
miRNA:   3'- -AGCUGGU----CGuUUGUUUGGC-UGUGCag -5'
27688 5' -49.8 NC_005882.1 + 24615 0.67 0.853565
Target:  5'- cCGGCCAGaCGcuCAcggAACUGACguuGCGUCg -3'
miRNA:   3'- aGCUGGUC-GUuuGU---UUGGCUG---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 24468 0.66 0.895038
Target:  5'- gUCaGCCAGCAuguCuucgccGCCGACGCGg- -3'
miRNA:   3'- -AGcUGGUCGUuu-Guu----UGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 23753 0.74 0.431481
Target:  5'- cUCGACgAGCGAGuCGaucagcccuuggucGAUCGGCGCGUCg -3'
miRNA:   3'- -AGCUGgUCGUUU-GU--------------UUGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 23275 0.66 0.870163
Target:  5'- cCGGCCAGCGccuGCGcgagcgucgugccGAUCGGCGCaUCg -3'
miRNA:   3'- aGCUGGUCGUu--UGU-------------UUGGCUGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 23244 0.69 0.729932
Target:  5'- -gGGCCGGCGGGCAcgaucAACUucaACACGUCc -3'
miRNA:   3'- agCUGGUCGUUUGU-----UUGGc--UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 23192 0.7 0.672316
Target:  5'- cUCGACCGagaccgaguucuGCGuGCAGuacGCCGGCGCGaUCa -3'
miRNA:   3'- -AGCUGGU------------CGUuUGUU---UGGCUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 23010 0.66 0.887323
Target:  5'- aCGGCC-GCGGACAucAUCGGCGCcGUg -3'
miRNA:   3'- aGCUGGuCGUUUGUu-UGGCUGUG-CAg -5'
27688 5' -49.8 NC_005882.1 + 22798 0.7 0.68398
Target:  5'- aCGGCCGGguCGAGCAcGuuGACACGaUCa -3'
miRNA:   3'- aGCUGGUC--GUUUGUuUggCUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 22724 0.74 0.443899
Target:  5'- aUCGugaaGCCGGCGAgcuGCGGGCCGAacugcgcCGCGUCg -3'
miRNA:   3'- -AGC----UGGUCGUU---UGUUUGGCU-------GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 22246 0.74 0.466103
Target:  5'- aUCGugaaauACCAGUAcAGCGGACCGACcagcgGCGUCa -3'
miRNA:   3'- -AGC------UGGUCGU-UUGUUUGGCUG-----UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21960 0.67 0.82544
Target:  5'- cUGACCAGC-AACGcGCCGAuCGCa-- -3'
miRNA:   3'- aGCUGGUCGuUUGUuUGGCU-GUGcag -5'
27688 5' -49.8 NC_005882.1 + 21425 0.73 0.521127
Target:  5'- gCGcACCGGCGccGACGAcgaucaauACCGACAuCGUCg -3'
miRNA:   3'- aGC-UGGUCGU--UUGUU--------UGGCUGU-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 21410 0.7 0.68398
Target:  5'- aCGGCCAGCuu-CAggUCGGCgaGCGUg -3'
miRNA:   3'- aGCUGGUCGuuuGUuuGGCUG--UGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.