miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 28143 1.12 0.001444
Target:  5'- gUCGACCAGCAAACAAACCGACACGUCg -3'
miRNA:   3'- -AGCUGGUCGUUUGUUUGGCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 19422 0.72 0.590166
Target:  5'- cCGACCAGCGcAUucGCCGaACGCGg- -3'
miRNA:   3'- aGCUGGUCGUuUGuuUGGC-UGUGCag -5'
27688 5' -49.8 NC_005882.1 + 33681 0.71 0.601871
Target:  5'- uUCGugCAGCGAGCAGucgguaauuACCGAUcCGcCa -3'
miRNA:   3'- -AGCugGUCGUUUGUU---------UGGCUGuGCaG- -5'
27688 5' -49.8 NC_005882.1 + 8191 0.71 0.608909
Target:  5'- cCGACCGGCGcuugccgccacccAGCGAgugacgaaaucggcACCGcACGCGUCc -3'
miRNA:   3'- aGCUGGUCGU-------------UUGUU--------------UGGC-UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 17882 0.69 0.741175
Target:  5'- gCGGCCGGCGAcCGccUCGGCACGa- -3'
miRNA:   3'- aGCUGGUCGUUuGUuuGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 23244 0.69 0.729932
Target:  5'- -gGGCCGGCGGGCAcgaucAACUucaACACGUCc -3'
miRNA:   3'- agCUGGUCGUUUGU-----UUGGc--UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 4722 0.69 0.729932
Target:  5'- -gGGCCGGUAAGCucGgCGACgaucGCGUCg -3'
miRNA:   3'- agCUGGUCGUUUGuuUgGCUG----UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 18475 0.69 0.718576
Target:  5'- -aGuuCGGCGGGCAAGCCGGuCGCGg- -3'
miRNA:   3'- agCugGUCGUUUGUUUGGCU-GUGCag -5'
27688 5' -49.8 NC_005882.1 + 12546 0.7 0.70367
Target:  5'- gCGGCCGGCGcugcGGCGAucggcgcacuggcgGCUGGCGCGgUCg -3'
miRNA:   3'- aGCUGGUCGU----UUGUU--------------UGGCUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 17928 0.7 0.68863
Target:  5'- -aGACCGGCGAGCu-GCgCGaggucgcgacguuccGCACGUCg -3'
miRNA:   3'- agCUGGUCGUUUGuuUG-GC---------------UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21282 0.7 0.672316
Target:  5'- cUCGAUgCGGCGAcgGC-GGCCGGCgACGUCa -3'
miRNA:   3'- -AGCUG-GUCGUU--UGuUUGGCUG-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 20444 0.71 0.625358
Target:  5'- gCGGCCGGC-AGCGAuCCGGuCgGCGUCa -3'
miRNA:   3'- aGCUGGUCGuUUGUUuGGCU-G-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 13948 0.71 0.648872
Target:  5'- gCGAUCaaGGCGAGCAcggaAGCCGACGCaUCc -3'
miRNA:   3'- aGCUGG--UCGUUUGU----UUGGCUGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 10709 0.71 0.648872
Target:  5'- cUCGAuCCGGUAucACAAccGCCGGCGCG-Cg -3'
miRNA:   3'- -AGCU-GGUCGUu-UGUU--UGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 35070 0.71 0.648872
Target:  5'- aUCGGCCGGC--ACGAAUgGGCA-GUCg -3'
miRNA:   3'- -AGCUGGUCGuuUGUUUGgCUGUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 12367 0.7 0.660609
Target:  5'- uUCGGCCAuGuCGAGCGguucaacgccGGCCGGCACG-Cg -3'
miRNA:   3'- -AGCUGGU-C-GUUUGU----------UUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 18406 0.66 0.902449
Target:  5'- -aGACCGGCcuuGCGAcgCGACGCGg- -3'
miRNA:   3'- agCUGGUCGuu-UGUUugGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 16282 0.77 0.330436
Target:  5'- gUCGGCCGGCuu----GCCGACgACGUCg -3'
miRNA:   3'- -AGCUGGUCGuuuguuUGGCUG-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 16443 0.76 0.375405
Target:  5'- gUCGGCCAG-AAGCAcAUCGACAgGUCc -3'
miRNA:   3'- -AGCUGGUCgUUUGUuUGGCUGUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 16515 0.75 0.414243
Target:  5'- cCGACCAGCAucGGCGAACCG-UACuUCu -3'
miRNA:   3'- aGCUGGUCGU--UUGUUUGGCuGUGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.