miRNA display CGI


Results 101 - 119 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 16443 0.76 0.375405
Target:  5'- gUCGGCCAG-AAGCAcAUCGACAgGUCc -3'
miRNA:   3'- -AGCUGGUCgUUUGUuUGGCUGUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 16282 0.77 0.330436
Target:  5'- gUCGGCCGGCuu----GCCGACgACGUCg -3'
miRNA:   3'- -AGCUGGUCGuuuguuUGGCUG-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 18533 0.71 0.601871
Target:  5'- gCGACCGGCuuGCccGCCGaACugGUg -3'
miRNA:   3'- aGCUGGUCGuuUGuuUGGC-UGugCAg -5'
27688 5' -49.8 NC_005882.1 + 12668 0.71 0.625358
Target:  5'- gUCG-CCGGCAAGCGcACCGGCGUGa- -3'
miRNA:   3'- -AGCuGGUCGUUUGUuUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 20145 0.71 0.635942
Target:  5'- aCGACCGGCAucaGGCucuGGCCGAUgaauucgGCGUUc -3'
miRNA:   3'- aGCUGGUCGU---UUGu--UUGGCUG-------UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 33151 0.69 0.71515
Target:  5'- cCGACCAGUucGGCAAGCCuugccgcgagguccGACuuCGUCg -3'
miRNA:   3'- aGCUGGUCGu-UUGUUUGG--------------CUGu-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 27011 0.7 0.707123
Target:  5'- aCGGCC-GCGAACuuGCCGGcCGCGcCc -3'
miRNA:   3'- aGCUGGuCGUUUGuuUGGCU-GUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 17159 0.7 0.707123
Target:  5'- gCGACCAGCGccuGCGcgUCGGCAUucagGUCg -3'
miRNA:   3'- aGCUGGUCGUu--UGUuuGGCUGUG----CAG- -5'
27688 5' -49.8 NC_005882.1 + 32440 0.7 0.695587
Target:  5'- aUCGAUCAgGUAGACcagGAGCggCGACAUGUCg -3'
miRNA:   3'- -AGCUGGU-CGUUUG---UUUG--GCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 12435 0.7 0.68398
Target:  5'- cCGGCCGGCGuugaaccgcucGACAuGGCCGAaccaGCGUUg -3'
miRNA:   3'- aGCUGGUCGU-----------UUGU-UUGGCUg---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21410 0.7 0.68398
Target:  5'- aCGGCCAGCuu-CAggUCGGCgaGCGUg -3'
miRNA:   3'- aGCUGGUCGuuuGUuuGGCUG--UGCAg -5'
27688 5' -49.8 NC_005882.1 + 22798 0.7 0.68398
Target:  5'- aCGGCCGGguCGAGCAcGuuGACACGaUCa -3'
miRNA:   3'- aGCUGGUC--GUUUGUuUggCUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 23192 0.7 0.672316
Target:  5'- cUCGACCGagaccgaguucuGCGuGCAGuacGCCGGCGCGaUCa -3'
miRNA:   3'- -AGCUGGU------------CGUuUGUU---UGGCUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 19097 0.7 0.672316
Target:  5'- uUCGGCCuGCAGguuGCcGGCCGACGCc-- -3'
miRNA:   3'- -AGCUGGuCGUU---UGuUUGGCUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 29244 0.7 0.665297
Target:  5'- gCGGCCGcacGCGAGCAAcggcgcgccggcguaGCCGAUcuucaGCGUCa -3'
miRNA:   3'- aGCUGGU---CGUUUGUU---------------UGGCUG-----UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 31582 0.7 0.660609
Target:  5'- cUGGCCGGC-GACGAG-CGuCACGUCg -3'
miRNA:   3'- aGCUGGUCGuUUGUUUgGCuGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 17223 0.7 0.660609
Target:  5'- cUCGGCCAGCAu----GCCGAgCAgcuCGUCg -3'
miRNA:   3'- -AGCUGGUCGUuuguuUGGCU-GU---GCAG- -5'
27688 5' -49.8 NC_005882.1 + 32058 0.71 0.637118
Target:  5'- gUCGACCGGCGucGGCG-AUCGG-ACGUCg -3'
miRNA:   3'- -AGCUGGUCGU--UUGUuUGGCUgUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 5869 0.78 0.289562
Target:  5'- cCGACCAcGCGAGCGAcuggauuuacACCGAgUACGUCa -3'
miRNA:   3'- aGCUGGU-CGUUUGUU----------UGGCU-GUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.