Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27688 | 5' | -49.8 | NC_005882.1 | + | 23192 | 0.7 | 0.672316 |
Target: 5'- cUCGACCGagaccgaguucuGCGuGCAGuacGCCGGCGCGaUCa -3' miRNA: 3'- -AGCUGGU------------CGUuUGUU---UGGCUGUGC-AG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 31582 | 0.7 | 0.660609 |
Target: 5'- cUGGCCGGC-GACGAG-CGuCACGUCg -3' miRNA: 3'- aGCUGGUCGuUUGUUUgGCuGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 17278 | 0.73 | 0.521127 |
Target: 5'- -aGAUCGcGCGGGCAAGCCGuuccugcaGCGCGUCc -3' miRNA: 3'- agCUGGU-CGUUUGUUUGGC--------UGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 16515 | 0.75 | 0.414243 |
Target: 5'- cCGACCAGCAucGGCGAACCG-UACuUCu -3' miRNA: 3'- aGCUGGUCGU--UUGUUUGGCuGUGcAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 31947 | 0.69 | 0.741175 |
Target: 5'- gUCGACgAGCGggUAGACCugGACGCu-- -3' miRNA: 3'- -AGCUGgUCGUuuGUUUGG--CUGUGcag -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 17159 | 0.7 | 0.707123 |
Target: 5'- gCGACCAGCGccuGCGcgUCGGCAUucagGUCg -3' miRNA: 3'- aGCUGGUCGUu--UGUuuGGCUGUG----CAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 32058 | 0.71 | 0.637118 |
Target: 5'- gUCGACCGGCGucGGCG-AUCGG-ACGUCg -3' miRNA: 3'- -AGCUGGUCGU--UUGUuUGGCUgUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 16443 | 0.76 | 0.375405 |
Target: 5'- gUCGGCCAG-AAGCAcAUCGACAgGUCc -3' miRNA: 3'- -AGCUGGUCgUUUGUuUGGCUGUgCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 32440 | 0.7 | 0.695587 |
Target: 5'- aUCGAUCAgGUAGACcagGAGCggCGACAUGUCg -3' miRNA: 3'- -AGCUGGU-CGUUUG---UUUG--GCUGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 16282 | 0.77 | 0.330436 |
Target: 5'- gUCGGCCGGCuu----GCCGACgACGUCg -3' miRNA: 3'- -AGCUGGUCGuuuguuUGGCUG-UGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 17223 | 0.7 | 0.660609 |
Target: 5'- cUCGGCCAGCAu----GCCGAgCAgcuCGUCg -3' miRNA: 3'- -AGCUGGUCGUuuguuUGGCU-GU---GCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 22798 | 0.7 | 0.68398 |
Target: 5'- aCGGCCGGguCGAGCAcGuuGACACGaUCa -3' miRNA: 3'- aGCUGGUC--GUUUGUuUggCUGUGC-AG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 18533 | 0.71 | 0.601871 |
Target: 5'- gCGACCGGCuuGCccGCCGaACugGUg -3' miRNA: 3'- aGCUGGUCGuuUGuuUGGC-UGugCAg -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 15267 | 0.73 | 0.521127 |
Target: 5'- gUCGACCGGgAgcgccgugagcAGCGGGCCGA-GCGUCg -3' miRNA: 3'- -AGCUGGUCgU-----------UUGUUUGGCUgUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 22724 | 0.74 | 0.443899 |
Target: 5'- aUCGugaaGCCGGCGAgcuGCGGGCCGAacugcgcCGCGUCg -3' miRNA: 3'- -AGC----UGGUCGUU---UGUUUGGCU-------GUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 23753 | 0.74 | 0.431481 |
Target: 5'- cUCGACgAGCGAGuCGaucagcccuuggucGAUCGGCGCGUCg -3' miRNA: 3'- -AGCUGgUCGUUU-GU--------------UUGGCUGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 6920 | 0.68 | 0.784753 |
Target: 5'- uUCGGgaAGCAcgugAACAAGCCGccgcgcaaACGCGUCu -3' miRNA: 3'- -AGCUggUCGU----UUGUUUGGC--------UGUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 942 | 0.69 | 0.741175 |
Target: 5'- cUGGCUugAGCuGGCGGAUCGGgGCGUCg -3' miRNA: 3'- aGCUGG--UCGuUUGUUUGGCUgUGCAG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 5157 | 0.69 | 0.718576 |
Target: 5'- gUGAUCGGCGAaagcuaccggcgGCAcGCCGAUACGcCa -3' miRNA: 3'- aGCUGGUCGUU------------UGUuUGGCUGUGCaG- -5' |
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27688 | 5' | -49.8 | NC_005882.1 | + | 27011 | 0.7 | 0.707123 |
Target: 5'- aCGGCC-GCGAACuuGCCGGcCGCGcCc -3' miRNA: 3'- aGCUGGuCGUUUGuuUGGCU-GUGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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