miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 6920 0.68 0.784753
Target:  5'- uUCGGgaAGCAcgugAACAAGCCGccgcgcaaACGCGUCu -3'
miRNA:   3'- -AGCUggUCGU----UUGUUUGGC--------UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 23192 0.7 0.672316
Target:  5'- cUCGACCGagaccgaguucuGCGuGCAGuacGCCGGCGCGaUCa -3'
miRNA:   3'- -AGCUGGU------------CGUuUGUU---UGGCUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 22724 0.74 0.443899
Target:  5'- aUCGugaaGCCGGCGAgcuGCGGGCCGAacugcgcCGCGUCg -3'
miRNA:   3'- -AGC----UGGUCGUU---UGUUUGGCU-------GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 12782 0.68 0.784753
Target:  5'- gUCG-CCGGCGAGCGccGCCGcGCgcuGCGUCu -3'
miRNA:   3'- -AGCuGGUCGUUUGUu-UGGC-UG---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 27134 0.74 0.434567
Target:  5'- gCGAgCAGCcgcAGCGGGCCGAUaaACGUCa -3'
miRNA:   3'- aGCUgGUCGu--UUGUUUGGCUG--UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 24468 0.66 0.895038
Target:  5'- gUCaGCCAGCAuguCuucgccGCCGACGCGg- -3'
miRNA:   3'- -AGcUGGUCGUuu-Guu----UGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 15336 0.74 0.466103
Target:  5'- uUCGAUCAGCGGcACGugGACCGuCAgGUCg -3'
miRNA:   3'- -AGCUGGUCGUU-UGU--UUGGCuGUgCAG- -5'
27688 5' -49.8 NC_005882.1 + 32825 0.66 0.89428
Target:  5'- -aGACUcGCGAGuacgcauCGAGCCGGCGCGa- -3'
miRNA:   3'- agCUGGuCGUUU-------GUUUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 8091 0.66 0.885744
Target:  5'- aCGAuCCAGCAAGCAAuggaaggGCuugcauggcaucgCGGCaACGUCg -3'
miRNA:   3'- aGCU-GGUCGUUUGUU-------UG-------------GCUG-UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 28487 0.67 0.844441
Target:  5'- cUCGACgAGCGAcucaaugcuGCGAACgGAU-CGUCu -3'
miRNA:   3'- -AGCUGgUCGUU---------UGUUUGgCUGuGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21960 0.67 0.82544
Target:  5'- cUGACCAGC-AACGcGCCGAuCGCa-- -3'
miRNA:   3'- aGCUGGUCGuUUGUuUGGCU-GUGcag -5'
27688 5' -49.8 NC_005882.1 + 16767 0.68 0.805511
Target:  5'- cCGGCCuGC--GCGGACgCG-CGCGUCg -3'
miRNA:   3'- aGCUGGuCGuuUGUUUG-GCuGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 34056 0.68 0.784753
Target:  5'- cCGuACUGGCuAAACAAcucACCGGcCACGUCc -3'
miRNA:   3'- aGC-UGGUCG-UUUGUU---UGGCU-GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 31947 0.69 0.741175
Target:  5'- gUCGACgAGCGggUAGACCugGACGCu-- -3'
miRNA:   3'- -AGCUGgUCGUuuGUUUGG--CUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 5157 0.69 0.718576
Target:  5'- gUGAUCGGCGAaagcuaccggcgGCAcGCCGAUACGcCa -3'
miRNA:   3'- aGCUGGUCGUU------------UGUuUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 17159 0.7 0.707123
Target:  5'- gCGACCAGCGccuGCGcgUCGGCAUucagGUCg -3'
miRNA:   3'- aGCUGGUCGUu--UGUuuGGCUGUG----CAG- -5'
27688 5' -49.8 NC_005882.1 + 21410 0.7 0.68398
Target:  5'- aCGGCCAGCuu-CAggUCGGCgaGCGUg -3'
miRNA:   3'- aGCUGGUCGuuuGUuuGGCUG--UGCAg -5'
27688 5' -49.8 NC_005882.1 + 31582 0.7 0.660609
Target:  5'- cUGGCCGGC-GACGAG-CGuCACGUCg -3'
miRNA:   3'- aGCUGGUCGuUUGUUUgGCuGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 20145 0.71 0.635942
Target:  5'- aCGACCGGCAucaGGCucuGGCCGAUgaauucgGCGUUc -3'
miRNA:   3'- aGCUGGUCGU---UUGu--UUGGCUG-------UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 19060 0.73 0.532445
Target:  5'- gCGAcCCAGCcc-CAcGCCGGCGCGUUg -3'
miRNA:   3'- aGCU-GGUCGuuuGUuUGGCUGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.