miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 8119 0.69 0.729932
Target:  5'- cUCGGCCAauGCAGACGAAaCGAuCGCGa- -3'
miRNA:   3'- -AGCUGGU--CGUUUGUUUgGCU-GUGCag -5'
27688 5' -49.8 NC_005882.1 + 5157 0.69 0.718576
Target:  5'- gUGAUCGGCGAaagcuaccggcgGCAcGCCGAUACGcCa -3'
miRNA:   3'- aGCUGGUCGUU------------UGUuUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 11154 0.68 0.815586
Target:  5'- cCGACCuuuGCGAGCuGAUCGucCGCGUa -3'
miRNA:   3'- aGCUGGu--CGUUUGuUUGGCu-GUGCAg -5'
27688 5' -49.8 NC_005882.1 + 31961 0.69 0.741175
Target:  5'- cCGACgAGCGucGGCGgccgcuGACCGAuUACGUCg -3'
miRNA:   3'- aGCUGgUCGU--UUGU------UUGGCU-GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 7342 0.69 0.752293
Target:  5'- gUCGACCAuuGCGGGCAugcCCGGaacaucgGCGUCg -3'
miRNA:   3'- -AGCUGGU--CGUUUGUuu-GGCUg------UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21141 0.69 0.763272
Target:  5'- gUCGGCgAGCAAGCGccggucAACCuGCucgGCGUCa -3'
miRNA:   3'- -AGCUGgUCGUUUGU------UUGGcUG---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21425 0.73 0.521127
Target:  5'- gCGcACCGGCGccGACGAcgaucaauACCGACAuCGUCg -3'
miRNA:   3'- aGC-UGGUCGU--UUGUU--------UGGCUGU-GCAG- -5'
27688 5' -49.8 NC_005882.1 + 15981 0.66 0.902449
Target:  5'- gCGAgCuGCGcGCGGACgCG-CACGUCg -3'
miRNA:   3'- aGCUgGuCGUuUGUUUG-GCuGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 17882 0.69 0.741175
Target:  5'- gCGGCCGGCGAcCGccUCGGCACGa- -3'
miRNA:   3'- aGCUGGUCGUUuGUuuGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 23244 0.69 0.729932
Target:  5'- -gGGCCGGCGGGCAcgaucAACUucaACACGUCc -3'
miRNA:   3'- agCUGGUCGUUUGU-----UUGGc--UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 1898 0.66 0.902449
Target:  5'- gCGGCCAGCGAAaguGCuCGAugucgcgguuaCGCGUUg -3'
miRNA:   3'- aGCUGGUCGUUUguuUG-GCU-----------GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 3470 0.66 0.895038
Target:  5'- aCG-UCGGCGGugAcGACCGGCACGcCc -3'
miRNA:   3'- aGCuGGUCGUUugU-UUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 23010 0.66 0.887323
Target:  5'- aCGGCC-GCGGACAucAUCGGCGCcGUg -3'
miRNA:   3'- aGCUGGuCGUUUGUu-UGGCUGUG-CAg -5'
27688 5' -49.8 NC_005882.1 + 3236 0.66 0.887323
Target:  5'- aCGACUucGCGAgguACGGGCCGAUcuggauCGUCg -3'
miRNA:   3'- aGCUGGu-CGUU---UGUUUGGCUGu-----GCAG- -5'
27688 5' -49.8 NC_005882.1 + 29812 0.66 0.887323
Target:  5'- cUUGACCGGacgaaccuCAAGCAGACUGGCGgcucgGUCg -3'
miRNA:   3'- -AGCUGGUC--------GUUUGUUUGGCUGUg----CAG- -5'
27688 5' -49.8 NC_005882.1 + 4722 0.69 0.729932
Target:  5'- -gGGCCGGUAAGCucGgCGACgaucGCGUCg -3'
miRNA:   3'- agCUGGUCGUUUGuuUgGCUG----UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 26157 0.66 0.902449
Target:  5'- gCG-CCGGCAGugGCGAcgaaGCCGugACGa- -3'
miRNA:   3'- aGCuGGUCGUU--UGUU----UGGCugUGCag -5'
27688 5' -49.8 NC_005882.1 + 8191 0.71 0.608909
Target:  5'- cCGACCGGCGcuugccgccacccAGCGAgugacgaaaucggcACCGcACGCGUCc -3'
miRNA:   3'- aGCUGGUCGU-------------UUGUU--------------UGGC-UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 33681 0.71 0.601871
Target:  5'- uUCGugCAGCGAGCAGucgguaauuACCGAUcCGcCa -3'
miRNA:   3'- -AGCugGUCGUUUGUU---------UGGCUGuGCaG- -5'
27688 5' -49.8 NC_005882.1 + 19422 0.72 0.590166
Target:  5'- cCGACCAGCGcAUucGCCGaACGCGg- -3'
miRNA:   3'- aGCUGGUCGUuUGuuUGGC-UGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.