miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 1898 0.66 0.902449
Target:  5'- gCGGCCAGCGAAaguGCuCGAugucgcgguuaCGCGUUg -3'
miRNA:   3'- aGCUGGUCGUUUguuUG-GCU-----------GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 3470 0.66 0.895038
Target:  5'- aCG-UCGGCGGugAcGACCGGCACGcCc -3'
miRNA:   3'- aGCuGGUCGUUugU-UUGGCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 24615 0.67 0.853565
Target:  5'- cCGGCCAGaCGcuCAcggAACUGACguuGCGUCg -3'
miRNA:   3'- aGCUGGUC-GUuuGU---UUGGCUG---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 29812 0.66 0.887323
Target:  5'- cUUGACCGGacgaaccuCAAGCAGACUGGCGgcucgGUCg -3'
miRNA:   3'- -AGCUGGUC--------GUUUGUUUGGCUGUg----CAG- -5'
27688 5' -49.8 NC_005882.1 + 25870 0.66 0.887323
Target:  5'- cCGGCCAGaaauCGAACCugcucgGGCGCGUg -3'
miRNA:   3'- aGCUGGUCguuuGUUUGG------CUGUGCAg -5'
27688 5' -49.8 NC_005882.1 + 21072 0.66 0.887323
Target:  5'- gUCGGCUucgaugguGGCGuguGCGcAGCCGGCGCGa- -3'
miRNA:   3'- -AGCUGG--------UCGUu--UGU-UUGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 25407 0.66 0.879312
Target:  5'- cUCGGCCGcgucGCcGACGAGCUGcGCGCGa- -3'
miRNA:   3'- -AGCUGGU----CGuUUGUUUGGC-UGUGCag -5'
27688 5' -49.8 NC_005882.1 + 2215 0.66 0.879312
Target:  5'- gCGGCCuGCAAGCGuucAUCGaACGCGa- -3'
miRNA:   3'- aGCUGGuCGUUUGUu--UGGC-UGUGCag -5'
27688 5' -49.8 NC_005882.1 + 29536 0.67 0.853565
Target:  5'- gCGGuCCAGCAguucaAGCGcGCCGACuugaaGUCg -3'
miRNA:   3'- aGCU-GGUCGU-----UUGUuUGGCUGug---CAG- -5'
27688 5' -49.8 NC_005882.1 + 5261 0.67 0.844441
Target:  5'- cCGACCAugacGCccGGCAccgaCGACACGUCg -3'
miRNA:   3'- aGCUGGU----CGu-UUGUuug-GCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 4722 0.69 0.729932
Target:  5'- -gGGCCGGUAAGCucGgCGACgaucGCGUCg -3'
miRNA:   3'- agCUGGUCGUUUGuuUgGCUG----UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 23244 0.69 0.729932
Target:  5'- -gGGCCGGCGGGCAcgaucAACUucaACACGUCc -3'
miRNA:   3'- agCUGGUCGUUUGU-----UUGGc--UGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 17882 0.69 0.741175
Target:  5'- gCGGCCGGCGAcCGccUCGGCACGa- -3'
miRNA:   3'- aGCUGGUCGUUuGUuuGGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 31961 0.69 0.741175
Target:  5'- cCGACgAGCGucGGCGgccgcuGACCGAuUACGUCg -3'
miRNA:   3'- aGCUGgUCGU--UUGU------UUGGCU-GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 7342 0.69 0.752293
Target:  5'- gUCGACCAuuGCGGGCAugcCCGGaacaucgGCGUCg -3'
miRNA:   3'- -AGCUGGU--CGUUUGUuu-GGCUg------UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21141 0.69 0.763272
Target:  5'- gUCGGCgAGCAAGCGccggucAACCuGCucgGCGUCa -3'
miRNA:   3'- -AGCUGgUCGUUUGU------UUGGcUG---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 21231 0.68 0.773021
Target:  5'- gCGGCCGGCcaagccauuccgaAGGC-AACCGGCGCaUCg -3'
miRNA:   3'- aGCUGGUCG-------------UUUGuUUGGCUGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 3236 0.66 0.887323
Target:  5'- aCGACUucGCGAgguACGGGCCGAUcuggauCGUCg -3'
miRNA:   3'- aGCUGGu-CGUU---UGUUUGGCUGu-----GCAG- -5'
27688 5' -49.8 NC_005882.1 + 3300 0.67 0.835062
Target:  5'- uUCGGCCAGCAcGCGguagcccaGGCCG-CGCa-- -3'
miRNA:   3'- -AGCUGGUCGUuUGU--------UUGGCuGUGcag -5'
27688 5' -49.8 NC_005882.1 + 19935 0.67 0.841654
Target:  5'- gCGGCC-GCGAACGcggugauccguuauAACCGGCGCa-- -3'
miRNA:   3'- aGCUGGuCGUUUGU--------------UUGGCUGUGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.