miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27688 5' -49.8 NC_005882.1 + 5097 0.66 0.876851
Target:  5'- aUCGAgCAGCucguGACAGguacgucgacuccuGCCGACGCu-- -3'
miRNA:   3'- -AGCUgGUCGu---UUGUU--------------UGGCUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 23275 0.66 0.870163
Target:  5'- cCGGCCAGCGccuGCGcgagcgucgugccGAUCGGCGCaUCg -3'
miRNA:   3'- aGCUGGUCGUu--UGU-------------UUGGCUGUGcAG- -5'
27688 5' -49.8 NC_005882.1 + 33083 0.67 0.862424
Target:  5'- -gGACCucgcGGCAAgGCuuGCCGaACugGUCg -3'
miRNA:   3'- agCUGG----UCGUU-UGuuUGGC-UGugCAG- -5'
27688 5' -49.8 NC_005882.1 + 29536 0.67 0.853565
Target:  5'- gCGGuCCAGCAguucaAGCGcGCCGACuugaaGUCg -3'
miRNA:   3'- aGCU-GGUCGU-----UUGUuUGGCUGug---CAG- -5'
27688 5' -49.8 NC_005882.1 + 24615 0.67 0.853565
Target:  5'- cCGGCCAGaCGcuCAcggAACUGACguuGCGUCg -3'
miRNA:   3'- aGCUGGUC-GUuuGU---UUGGCUG---UGCAG- -5'
27688 5' -49.8 NC_005882.1 + 11402 0.67 0.853565
Target:  5'- gUCGAuccaaCCAGCGAGCAAcgCGAUugcauCGUCg -3'
miRNA:   3'- -AGCU-----GGUCGUUUGUUugGCUGu----GCAG- -5'
27688 5' -49.8 NC_005882.1 + 5261 0.67 0.844441
Target:  5'- cCGACCAugacGCccGGCAccgaCGACACGUCg -3'
miRNA:   3'- aGCUGGU----CGu-UUGUuug-GCUGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 3316 0.67 0.844441
Target:  5'- gCGGCCGGCcGACGauccaGAUCGGCcCGUa -3'
miRNA:   3'- aGCUGGUCGuUUGU-----UUGGCUGuGCAg -5'
27688 5' -49.8 NC_005882.1 + 28487 0.67 0.844441
Target:  5'- cUCGACgAGCGAcucaaugcuGCGAACgGAU-CGUCu -3'
miRNA:   3'- -AGCUGgUCGUU---------UGUUUGgCUGuGCAG- -5'
27688 5' -49.8 NC_005882.1 + 19935 0.67 0.841654
Target:  5'- gCGGCC-GCGAACGcggugauccguuauAACCGGCGCa-- -3'
miRNA:   3'- aGCUGGuCGUUUGU--------------UUGGCUGUGcag -5'
27688 5' -49.8 NC_005882.1 + 3300 0.67 0.835062
Target:  5'- uUCGGCCAGCAcGCGguagcccaGGCCG-CGCa-- -3'
miRNA:   3'- -AGCUGGUCGUuUGU--------UUGGCuGUGcag -5'
27688 5' -49.8 NC_005882.1 + 5241 0.67 0.82544
Target:  5'- cUGACUGGCGagGACGGGCgCGAgACGUa -3'
miRNA:   3'- aGCUGGUCGU--UUGUUUG-GCUgUGCAg -5'
27688 5' -49.8 NC_005882.1 + 21960 0.67 0.82544
Target:  5'- cUGACCAGC-AACGcGCCGAuCGCa-- -3'
miRNA:   3'- aGCUGGUCGuUUGUuUGGCU-GUGcag -5'
27688 5' -49.8 NC_005882.1 + 18322 0.67 0.82544
Target:  5'- -aGAaaaaCGGCGAGCuGACCGcggcCGCGUCg -3'
miRNA:   3'- agCUg---GUCGUUUGuUUGGCu---GUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 9500 0.67 0.82544
Target:  5'- gCGcGCUGGCGGccGCAAGCaCGACGCGcCa -3'
miRNA:   3'- aGC-UGGUCGUU--UGUUUG-GCUGUGCaG- -5'
27688 5' -49.8 NC_005882.1 + 4862 0.68 0.815586
Target:  5'- cUCGAUCAGCGA---GAgCGGCGCGa- -3'
miRNA:   3'- -AGCUGGUCGUUuguUUgGCUGUGCag -5'
27688 5' -49.8 NC_005882.1 + 11154 0.68 0.815586
Target:  5'- cCGACCuuuGCGAGCuGAUCGucCGCGUa -3'
miRNA:   3'- aGCUGGu--CGUUUGuUUGGCu-GUGCAg -5'
27688 5' -49.8 NC_005882.1 + 2826 0.68 0.812586
Target:  5'- uUCGACCuGGCGgcgcgaagcaauacGACGuAGCUGGCGCGaUCg -3'
miRNA:   3'- -AGCUGG-UCGU--------------UUGU-UUGGCUGUGC-AG- -5'
27688 5' -49.8 NC_005882.1 + 16767 0.68 0.805511
Target:  5'- cCGGCCuGC--GCGGACgCG-CGCGUCg -3'
miRNA:   3'- aGCUGGuCGuuUGUUUG-GCuGUGCAG- -5'
27688 5' -49.8 NC_005882.1 + 15659 0.68 0.805511
Target:  5'- aUGACCuguacGGCGcGCAGGuCCGcgaGCACGUCg -3'
miRNA:   3'- aGCUGG-----UCGUuUGUUU-GGC---UGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.