miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27689 5' -67.1 NC_005882.1 + 12783 0.68 0.106981
Target:  5'- gGUCGCCGGCGagcgccGCCGCGCGcuGCG-UCUc -3'
miRNA:   3'- -CGGCGGCCGC------CGGCGCGUc-CGCcAGA- -5'
27689 5' -67.1 NC_005882.1 + 12950 0.68 0.104138
Target:  5'- cGgCGCCGGCGGCgGCGUuccacacGCGGa-- -3'
miRNA:   3'- -CgGCGGCCGCCGgCGCGuc-----CGCCaga -5'
27689 5' -67.1 NC_005882.1 + 20504 0.68 0.104138
Target:  5'- cGCCGaCCGGaucgcugcCGGCCGCGguGaacuucuCGGUCg -3'
miRNA:   3'- -CGGC-GGCC--------GCCGGCGCguCc------GCCAGa -5'
27689 5' -67.1 NC_005882.1 + 23615 0.68 0.101366
Target:  5'- uGCCGCCGuGCGGUUgccccacagGCGCAGGCc---- -3'
miRNA:   3'- -CGGCGGC-CGCCGG---------CGCGUCCGccaga -5'
27689 5' -67.1 NC_005882.1 + 4050 0.69 0.09096
Target:  5'- gGCCGCC-GUGGCCcCGCuGGagaaGGUCa -3'
miRNA:   3'- -CGGCGGcCGCCGGcGCGuCCg---CCAGa -5'
27689 5' -67.1 NC_005882.1 + 22478 0.69 0.088521
Target:  5'- gGCaCGCUGG-GG-CGCGCGGGCuuGGUCg -3'
miRNA:   3'- -CG-GCGGCCgCCgGCGCGUCCG--CCAGa -5'
27689 5' -67.1 NC_005882.1 + 31018 0.69 0.086144
Target:  5'- uCCGCCGGUGggaGCCGCGCuGcGaGGUCg -3'
miRNA:   3'- cGGCGGCCGC---CGGCGCGuC-CgCCAGa -5'
27689 5' -67.1 NC_005882.1 + 15999 0.69 0.083829
Target:  5'- cGCaCGUCGGCGGgUGCGUgcgccgccgcaAGGCGGcCg -3'
miRNA:   3'- -CG-GCGGCCGCCgGCGCG-----------UCCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 12536 0.7 0.081573
Target:  5'- uGUCGCggCGGCGGCCgGCGCugcGGCGaUCg -3'
miRNA:   3'- -CGGCG--GCCGCCGG-CGCGu--CCGCcAGa -5'
27689 5' -67.1 NC_005882.1 + 14213 0.7 0.079375
Target:  5'- gGCCGCC-GCGGCCGuCGacaAGGUcGUCa -3'
miRNA:   3'- -CGGCGGcCGCCGGC-GCg--UCCGcCAGa -5'
27689 5' -67.1 NC_005882.1 + 17816 0.7 0.075147
Target:  5'- gGCUGCCGGU-GCCGCGUgguGGCGcuGUCg -3'
miRNA:   3'- -CGGCGGCCGcCGGCGCGu--CCGC--CAGa -5'
27689 5' -67.1 NC_005882.1 + 19857 0.7 0.073115
Target:  5'- -aCGCCGGCGcGCuCGCGCGuGGCGuGcUCg -3'
miRNA:   3'- cgGCGGCCGC-CG-GCGCGU-CCGC-C-AGa -5'
27689 5' -67.1 NC_005882.1 + 11932 0.7 0.073115
Target:  5'- cGCCGCCGcgcccGUGGCCGCGCaagugcccgccgAGGCGcuggCUa -3'
miRNA:   3'- -CGGCGGC-----CGCCGGCGCG------------UCCGCca--GA- -5'
27689 5' -67.1 NC_005882.1 + 26060 0.7 0.071136
Target:  5'- uGCCGCCGuaGGCCGCGCGGuuGa--- -3'
miRNA:   3'- -CGGCGGCcgCCGGCGCGUCcgCcaga -5'
27689 5' -67.1 NC_005882.1 + 10414 0.71 0.067331
Target:  5'- aGCCgGCCGGCGauucaGUCGCGCAGGCu---- -3'
miRNA:   3'- -CGG-CGGCCGC-----CGGCGCGUCCGccaga -5'
27689 5' -67.1 NC_005882.1 + 21474 0.71 0.065503
Target:  5'- cGgCGCCGGUGcGCCGUaGUcGGUGGUCg -3'
miRNA:   3'- -CgGCGGCCGC-CGGCG-CGuCCGCCAGa -5'
27689 5' -67.1 NC_005882.1 + 28314 0.71 0.065323
Target:  5'- gGCCGCCGGCGGCaccuugggcuguaCG-GCcGGCGG-CUu -3'
miRNA:   3'- -CGGCGGCCGCCG-------------GCgCGuCCGCCaGA- -5'
27689 5' -67.1 NC_005882.1 + 27562 0.71 0.063723
Target:  5'- cGCuCGUCGGCGgucGCCGCGCGcGCGGcCg -3'
miRNA:   3'- -CG-GCGGCCGC---CGGCGCGUcCGCCaGa -5'
27689 5' -67.1 NC_005882.1 + 18334 0.72 0.055501
Target:  5'- aGCUGaCC-GCGGCCGCGUcgcgucgcaAGGCcGGUCUg -3'
miRNA:   3'- -CGGC-GGcCGCCGGCGCG---------UCCG-CCAGA- -5'
27689 5' -67.1 NC_005882.1 + 32274 0.72 0.052508
Target:  5'- uUCGCUGGCGGUcagcaCGCGCAGuGCGaGUCc -3'
miRNA:   3'- cGGCGGCCGCCG-----GCGCGUC-CGC-CAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.