miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2769 3' -58.3 NC_001491.2 + 147364 0.66 0.798613
Target:  5'- aGCGCCGCUUGCcgcucuUGC-CCCUGGggcgcCCGUg -3'
miRNA:   3'- -UGUGGUGAGCGu-----ACGcGGGACU-----GGUA- -5'
2769 3' -58.3 NC_001491.2 + 89256 0.66 0.789538
Target:  5'- gGCcuCCACUCGCugcgcgaGCGCUCUGGCg-- -3'
miRNA:   3'- -UGu-GGUGAGCGua-----CGCGGGACUGgua -5'
2769 3' -58.3 NC_001491.2 + 140358 0.66 0.751904
Target:  5'- -gGCCGCgCGCAaucagUGCGCCCgaucucccGGCCAc -3'
miRNA:   3'- ugUGGUGaGCGU-----ACGCGGGa-------CUGGUa -5'
2769 3' -58.3 NC_001491.2 + 95175 0.66 0.751904
Target:  5'- aGCugCGCguuugCGguUGCGUCCaUGGCUAUa -3'
miRNA:   3'- -UGugGUGa----GCguACGCGGG-ACUGGUA- -5'
2769 3' -58.3 NC_001491.2 + 41275 0.67 0.741232
Target:  5'- cCACCAcCUCGCGcagaauaUGgguaGCCCUGugCAUg -3'
miRNA:   3'- uGUGGU-GAGCGU-------ACg---CGGGACugGUA- -5'
2769 3' -58.3 NC_001491.2 + 121672 0.68 0.661933
Target:  5'- gGCGCCACggcggggCGCAgaacGC-CCCUGGCCc- -3'
miRNA:   3'- -UGUGGUGa------GCGUa---CGcGGGACUGGua -5'
2769 3' -58.3 NC_001491.2 + 13336 0.68 0.651697
Target:  5'- gGCAUCGCUCGCGUGUGCggcaGCCAc -3'
miRNA:   3'- -UGUGGUGAGCGUACGCGggacUGGUa -5'
2769 3' -58.3 NC_001491.2 + 96341 0.68 0.631186
Target:  5'- -gGCCGCUggaggCGCAggcagGCGCCCagGACCGc -3'
miRNA:   3'- ugUGGUGA-----GCGUa----CGCGGGa-CUGGUa -5'
2769 3' -58.3 NC_001491.2 + 26087 0.68 0.63016
Target:  5'- cCGCCugUUGCGccUGCGCCCacugacgUGGCCu- -3'
miRNA:   3'- uGUGGugAGCGU--ACGCGGG-------ACUGGua -5'
2769 3' -58.3 NC_001491.2 + 137362 0.69 0.590235
Target:  5'- cGCGCCGC-CGCcUGUGCCUgcgGGCCu- -3'
miRNA:   3'- -UGUGGUGaGCGuACGCGGGa--CUGGua -5'
2769 3' -58.3 NC_001491.2 + 26746 0.69 0.590235
Target:  5'- uCGCCugUaaaGCAUGCgcucgacagacGCCCUGACCc- -3'
miRNA:   3'- uGUGGugAg--CGUACG-----------CGGGACUGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.