miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2769 5' -53.2 NC_001491.2 + 55882 0.66 0.967192
Target:  5'- -aGCGCgggUGAGGUUGggGGCauuaGAGC-UGg -3'
miRNA:   3'- uaUGCG---GCUCCAACuuCCG----CUUGcAC- -5'
2769 5' -53.2 NC_001491.2 + 129956 0.66 0.967192
Target:  5'- ---aGCUGAGG----GGGUGGACGUGg -3'
miRNA:   3'- uaugCGGCUCCaacuUCCGCUUGCAC- -5'
2769 5' -53.2 NC_001491.2 + 14918 0.67 0.95258
Target:  5'- cUGCGCUGGGG--GAGGGCGggUc-- -3'
miRNA:   3'- uAUGCGGCUCCaaCUUCCGCuuGcac -5'
2769 5' -53.2 NC_001491.2 + 103155 0.67 0.948336
Target:  5'- -aACGCCGGuagcgagccguuGGUgcaGAAGGCGAGCc-- -3'
miRNA:   3'- uaUGCGGCU------------CCAa--CUUCCGCUUGcac -5'
2769 5' -53.2 NC_001491.2 + 9493 0.68 0.928893
Target:  5'- gGUACGUCGAccUUcGAauucAGGCGGACGUGg -3'
miRNA:   3'- -UAUGCGGCUccAA-CU----UCCGCUUGCAC- -5'
2769 5' -53.2 NC_001491.2 + 106256 0.68 0.923407
Target:  5'- -cACGCCGGGGcgGguGGCG-ACGg- -3'
miRNA:   3'- uaUGCGGCUCCaaCuuCCGCuUGCac -5'
2769 5' -53.2 NC_001491.2 + 144766 0.68 0.898963
Target:  5'- --cCGCCGGGG-UGGAGaGCgGAGCGUc -3'
miRNA:   3'- uauGCGGCUCCaACUUC-CG-CUUGCAc -5'
2769 5' -53.2 NC_001491.2 + 115373 0.69 0.892237
Target:  5'- -gACcCCGAGGacgUGAAGGUGGugGUc -3'
miRNA:   3'- uaUGcGGCUCCa--ACUUCCGCUugCAc -5'
2769 5' -53.2 NC_001491.2 + 13928 0.69 0.884562
Target:  5'- -cGCGCCGGGGcUGGcggccuuGGGCGGugGc- -3'
miRNA:   3'- uaUGCGGCUCCaACU-------UCCGCUugCac -5'
2769 5' -53.2 NC_001491.2 + 125064 0.71 0.803672
Target:  5'- -gGCGCCGAG-----AGGCGAGCGUa -3'
miRNA:   3'- uaUGCGGCUCcaacuUCCGCUUGCAc -5'
2769 5' -53.2 NC_001491.2 + 101710 0.72 0.756255
Target:  5'- cUGCGagaGGGGUUGGAGGCcGugGUGg -3'
miRNA:   3'- uAUGCgg-CUCCAACUUCCGcUugCAC- -5'
2769 5' -53.2 NC_001491.2 + 32083 0.77 0.460649
Target:  5'- uUACGCCGGGaGggagUGAGGGUGuACGUGg -3'
miRNA:   3'- uAUGCGGCUC-Ca---ACUUCCGCuUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.