miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27690 3' -55.7 NC_005882.1 + 21737 0.66 0.572519
Target:  5'- aGGUCCGC--GCGc-GCcGUCGCCAGu -3'
miRNA:   3'- aCUAGGUGacCGCuuCGaCAGCGGUC- -5'
27690 3' -55.7 NC_005882.1 + 16333 0.66 0.550123
Target:  5'- gUGAUCCuuGCUGcgaaaGCGGAGCUGguUCuCCGGg -3'
miRNA:   3'- -ACUAGG--UGAC-----CGCUUCGAC--AGcGGUC- -5'
27690 3' -55.7 NC_005882.1 + 17655 0.66 0.54901
Target:  5'- aUGGUCUGCaGGCGccacgggcugccGAGCUGaaccugguugacuUCGCCGGu -3'
miRNA:   3'- -ACUAGGUGaCCGC------------UUCGAC-------------AGCGGUC- -5'
27690 3' -55.7 NC_005882.1 + 7805 0.67 0.463891
Target:  5'- -cGUCCAUccGUGAAGCUGgggCGCCAc -3'
miRNA:   3'- acUAGGUGacCGCUUCGACa--GCGGUc -5'
27690 3' -55.7 NC_005882.1 + 27582 0.68 0.423484
Target:  5'- gGcgCC-CUGgGCGAuGUUGUCGCCGa -3'
miRNA:   3'- aCuaGGuGAC-CGCUuCGACAGCGGUc -5'
27690 3' -55.7 NC_005882.1 + 12614 0.68 0.413715
Target:  5'- cGGUgCGCUugccGGCGAcGCgaagGUCGCCAa -3'
miRNA:   3'- aCUAgGUGA----CCGCUuCGa---CAGCGGUc -5'
27690 3' -55.7 NC_005882.1 + 5247 0.69 0.3946
Target:  5'- gUGGUCCugACUGGCGAGGaCgggCGCgAGa -3'
miRNA:   3'- -ACUAGG--UGACCGCUUC-GacaGCGgUC- -5'
27690 3' -55.7 NC_005882.1 + 12562 0.69 0.367022
Target:  5'- cGAUCggcgCACUGGCGGcuGGCgcgGUCGCUu- -3'
miRNA:   3'- aCUAG----GUGACCGCU--UCGa--CAGCGGuc -5'
27690 3' -55.7 NC_005882.1 + 13622 0.7 0.332365
Target:  5'- cGAUCgCguGCUGGUGAAGCUG-CGCaAGg -3'
miRNA:   3'- aCUAG-G--UGACCGCUUCGACaGCGgUC- -5'
27690 3' -55.7 NC_005882.1 + 17822 0.71 0.300172
Target:  5'- cGGUgCCGCgUGGUGgcGCUGUCGCaCGa -3'
miRNA:   3'- aCUA-GGUG-ACCGCuuCGACAGCG-GUc -5'
27690 3' -55.7 NC_005882.1 + 28558 0.71 0.270443
Target:  5'- cGGUCagggacgccagCGCUGGCGAcAGCU-UCGCCAGu -3'
miRNA:   3'- aCUAG-----------GUGACCGCU-UCGAcAGCGGUC- -5'
27690 3' -55.7 NC_005882.1 + 28029 0.78 0.087263
Target:  5'- cGAUCCggaagccgaGCUGGCGAAGCUG-CGCgCGGc -3'
miRNA:   3'- aCUAGG---------UGACCGCUUCGACaGCG-GUC- -5'
27690 3' -55.7 NC_005882.1 + 28478 1.08 0.000585
Target:  5'- cUGAUCCACUGGCGAAGCUGUCGCCAGc -3'
miRNA:   3'- -ACUAGGUGACCGCUUCGACAGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.