miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27691 3' -59.3 NC_005882.1 + 5911 0.66 0.415975
Target:  5'- uCGCccGGAUcGCGG-CCGAUCGuGUGUg -3'
miRNA:   3'- cGCGa-CCUA-CGCCaGGCUAGC-CGCGu -5'
27691 3' -59.3 NC_005882.1 + 18719 0.66 0.415975
Target:  5'- uGCGCgccucggGUGGUCCGGagGcGCGCAg -3'
miRNA:   3'- -CGCGaccua--CGCCAGGCUagC-CGCGU- -5'
27691 3' -59.3 NC_005882.1 + 18212 0.66 0.397447
Target:  5'- gGCGCUGG-UGCuGGUcaCCGAggacaacuUCGccGCGCAa -3'
miRNA:   3'- -CGCGACCuACG-CCA--GGCU--------AGC--CGCGU- -5'
27691 3' -59.3 NC_005882.1 + 11876 0.66 0.397447
Target:  5'- cGCGCUGGGucucugaccaUGCGcGUCCuGAUCGccuuugucgucGCGUu -3'
miRNA:   3'- -CGCGACCU----------ACGC-CAGG-CUAGC-----------CGCGu -5'
27691 3' -59.3 NC_005882.1 + 12014 0.66 0.379458
Target:  5'- gGgGCaUGGAUGCGccaGUCuCGucguucgCGGCGCAa -3'
miRNA:   3'- -CgCG-ACCUACGC---CAG-GCua-----GCCGCGU- -5'
27691 3' -59.3 NC_005882.1 + 12336 0.66 0.379458
Target:  5'- -gGCUGccgGCGGcgCCGAUCGGCa-- -3'
miRNA:   3'- cgCGACcuaCGCCa-GGCUAGCCGcgu -5'
27691 3' -59.3 NC_005882.1 + 19032 0.66 0.379458
Target:  5'- cGCGC-GGAUGgcCGaugaCGAUCGGCGCu -3'
miRNA:   3'- -CGCGaCCUAC--GCcag-GCUAGCCGCGu -5'
27691 3' -59.3 NC_005882.1 + 24507 0.67 0.362023
Target:  5'- uGCGCaGG-UGUGGgguuagccgCCGAugUUGGCGCGg -3'
miRNA:   3'- -CGCGaCCuACGCCa--------GGCU--AGCCGCGU- -5'
27691 3' -59.3 NC_005882.1 + 6737 0.67 0.336931
Target:  5'- cGCGCUGGuuuccuUGCGGauuUCCGcuccuucuucGUCcGGCGUg -3'
miRNA:   3'- -CGCGACCu-----ACGCC---AGGC----------UAG-CCGCGu -5'
27691 3' -59.3 NC_005882.1 + 2259 0.67 0.336931
Target:  5'- aCGCUGGAUGCGGUag---CGGC-CGu -3'
miRNA:   3'- cGCGACCUACGCCAggcuaGCCGcGU- -5'
27691 3' -59.3 NC_005882.1 + 19482 0.67 0.328853
Target:  5'- cGCGUUcGGcgaAUGCG--CUGGUCGGCGCAu -3'
miRNA:   3'- -CGCGA-CC---UACGCcaGGCUAGCCGCGU- -5'
27691 3' -59.3 NC_005882.1 + 23269 0.67 0.32092
Target:  5'- aGCGcCUGcgcGA-GCGucgugCCGAUCGGCGCAu -3'
miRNA:   3'- -CGC-GAC---CUaCGCca---GGCUAGCCGCGU- -5'
27691 3' -59.3 NC_005882.1 + 15029 0.67 0.32092
Target:  5'- -aGCUGGAcUGCGuG-CCGAagaacagcggCGGCGCAu -3'
miRNA:   3'- cgCGACCU-ACGC-CaGGCUa---------GCCGCGU- -5'
27691 3' -59.3 NC_005882.1 + 28694 0.68 0.31313
Target:  5'- -aGCUGGcccGCGGcCCGGUCGauuGCGCc -3'
miRNA:   3'- cgCGACCua-CGCCaGGCUAGC---CGCGu -5'
27691 3' -59.3 NC_005882.1 + 12538 0.68 0.276339
Target:  5'- uCGC-GGcgGCGG-CCGGcgcugcggcgaUCGGCGCAc -3'
miRNA:   3'- cGCGaCCuaCGCCaGGCU-----------AGCCGCGU- -5'
27691 3' -59.3 NC_005882.1 + 7224 0.68 0.276339
Target:  5'- cGCGUUGaaucaGGUCCgGGUCGGUGCAa -3'
miRNA:   3'- -CGCGACcuacgCCAGG-CUAGCCGCGU- -5'
27691 3' -59.3 NC_005882.1 + 22475 0.69 0.262619
Target:  5'- aCGCUGGGgcgcGCGGgcuuggUCGA-CGGCGCu -3'
miRNA:   3'- cGCGACCUa---CGCCa-----GGCUaGCCGCGu -5'
27691 3' -59.3 NC_005882.1 + 2057 0.7 0.202192
Target:  5'- aGCGCggaucGGUGauGUCCaAUCGGCGCAg -3'
miRNA:   3'- -CGCGac---CUACgcCAGGcUAGCCGCGU- -5'
27691 3' -59.3 NC_005882.1 + 8254 0.72 0.154212
Target:  5'- uCGCUGGGUgGCGGcaagcgCCGGUCGGCu-- -3'
miRNA:   3'- cGCGACCUA-CGCCa-----GGCUAGCCGcgu -5'
27691 3' -59.3 NC_005882.1 + 28566 1.1 0.000212
Target:  5'- uGCGCUGGAUGCGGUCCGAUCGGCGCAa -3'
miRNA:   3'- -CGCGACCUACGCCAGGCUAGCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.