miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27691 5' -53.5 NC_005882.1 + 34717 0.66 0.74997
Target:  5'- cAACcCGACGAaUGGGACGAcggcucuucUUGCCa- -3'
miRNA:   3'- -UUGcGCUGCUaGCCCUGCU---------AAUGGcc -5'
27691 5' -53.5 NC_005882.1 + 27639 0.66 0.739254
Target:  5'- cAACGCaGC--UCGGGGCGgAUcGCCGGc -3'
miRNA:   3'- -UUGCGcUGcuAGCCCUGC-UAaUGGCC- -5'
27691 5' -53.5 NC_005882.1 + 19190 0.66 0.728424
Target:  5'- -gUGCGGCGaAUCGGGGUGGUagaaGCUGGc -3'
miRNA:   3'- uuGCGCUGC-UAGCCCUGCUAa---UGGCC- -5'
27691 5' -53.5 NC_005882.1 + 11003 0.66 0.717493
Target:  5'- gAACGgcUGACGAUCGaGGcCGAggaaccGCCGGu -3'
miRNA:   3'- -UUGC--GCUGCUAGC-CCuGCUaa----UGGCC- -5'
27691 5' -53.5 NC_005882.1 + 32052 0.66 0.706473
Target:  5'- cGGCGuCGGCGAUCGGacgucGACGua-AUCGGu -3'
miRNA:   3'- -UUGC-GCUGCUAGCC-----CUGCuaaUGGCC- -5'
27691 5' -53.5 NC_005882.1 + 12715 0.66 0.706473
Target:  5'- aGACGCaGCGcgCGGcGGCGcucGCCGGc -3'
miRNA:   3'- -UUGCGcUGCuaGCC-CUGCuaaUGGCC- -5'
27691 5' -53.5 NC_005882.1 + 30440 0.67 0.695375
Target:  5'- -cCGUGACGggCGGG-CGAUcggcAUCGGa -3'
miRNA:   3'- uuGCGCUGCuaGCCCuGCUAa---UGGCC- -5'
27691 5' -53.5 NC_005882.1 + 34652 0.67 0.684214
Target:  5'- --gGCG-CGggCGGGAUGGaUACUGGu -3'
miRNA:   3'- uugCGCuGCuaGCCCUGCUaAUGGCC- -5'
27691 5' -53.5 NC_005882.1 + 3325 0.67 0.672999
Target:  5'- cGCGCGACGG-CGGccggccGACGAUccagAUCGGc -3'
miRNA:   3'- uUGCGCUGCUaGCC------CUGCUAa---UGGCC- -5'
27691 5' -53.5 NC_005882.1 + 16268 0.67 0.672999
Target:  5'- cGACGaCGuCGAUCGGcACGAUguaguUGCCGa -3'
miRNA:   3'- -UUGC-GCuGCUAGCCcUGCUA-----AUGGCc -5'
27691 5' -53.5 NC_005882.1 + 25714 0.68 0.639158
Target:  5'- uGCGCGAC-AUC---GCGAUUACCGGc -3'
miRNA:   3'- uUGCGCUGcUAGcccUGCUAAUGGCC- -5'
27691 5' -53.5 NC_005882.1 + 23198 0.68 0.632373
Target:  5'- cGAUGCGcCGAUCGGcacgacgcucgcgcaGGCGcugGCCGGg -3'
miRNA:   3'- -UUGCGCuGCUAGCC---------------CUGCuaaUGGCC- -5'
27691 5' -53.5 NC_005882.1 + 30997 0.68 0.627849
Target:  5'- uGCGCGAguCGGUCGacGCGAUccGCCGGu -3'
miRNA:   3'- uUGCGCU--GCUAGCccUGCUAa-UGGCC- -5'
27691 5' -53.5 NC_005882.1 + 2140 0.68 0.616545
Target:  5'- uGCGUGACGAucgccuggauuUCGGGGCGugcguCCGu -3'
miRNA:   3'- uUGCGCUGCU-----------AGCCCUGCuaau-GGCc -5'
27691 5' -53.5 NC_005882.1 + 30530 0.68 0.605254
Target:  5'- cGCGCGGcCGAcaaGGuGACGGUcgacgUGCCGGa -3'
miRNA:   3'- uUGCGCU-GCUag-CC-CUGCUA-----AUGGCC- -5'
27691 5' -53.5 NC_005882.1 + 1750 0.68 0.605254
Target:  5'- cAGCGUgGGCGcgCGGGcCGcccgUACCGGa -3'
miRNA:   3'- -UUGCG-CUGCuaGCCCuGCua--AUGGCC- -5'
27691 5' -53.5 NC_005882.1 + 26966 0.7 0.505819
Target:  5'- -uCGCGGCcguGAUCGGG-CG--UGCCGGg -3'
miRNA:   3'- uuGCGCUG---CUAGCCCuGCuaAUGGCC- -5'
27691 5' -53.5 NC_005882.1 + 26852 0.7 0.49516
Target:  5'- -uUGaCGACGGUCGGGGCGA--AgUGGa -3'
miRNA:   3'- uuGC-GCUGCUAGCCCUGCUaaUgGCC- -5'
27691 5' -53.5 NC_005882.1 + 21276 0.7 0.484605
Target:  5'- uACGCGcuCGAUgCGGcGACGGcgGCCGGc -3'
miRNA:   3'- uUGCGCu-GCUA-GCC-CUGCUaaUGGCC- -5'
27691 5' -53.5 NC_005882.1 + 30814 0.71 0.43356
Target:  5'- cGCGCGACcaGUCGGGGgGAUauuaaaGCCGGc -3'
miRNA:   3'- uUGCGCUGc-UAGCCCUgCUAa-----UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.