miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27692 5' -47.8 NC_005882.1 + 621 0.68 0.888863
Target:  5'- ---gGGGCGGAcAGAACAUCuacuuuCCGAUGg -3'
miRNA:   3'- caugCUCGUCU-UCUUGUAGu-----GGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 6978 0.68 0.880757
Target:  5'- -gGCGAGCuGAAGcucgacGAUAUCGCCAccAUGa -3'
miRNA:   3'- caUGCUCGuCUUC------UUGUAGUGGU--UGC- -5'
27692 5' -47.8 NC_005882.1 + 12806 0.68 0.872348
Target:  5'- cGUGcCGGGCuucucGgcGAACAggUCGCCGGCGa -3'
miRNA:   3'- -CAU-GCUCGu----CuuCUUGU--AGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 29386 0.69 0.845388
Target:  5'- -cGCGAGCcgc-GAuCGUCGCCAGCGu -3'
miRNA:   3'- caUGCUCGucuuCUuGUAGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 27854 0.69 0.826071
Target:  5'- -cGCGAGCAGGucgucGAGCAugcgcuccaggUCGCgCAACGa -3'
miRNA:   3'- caUGCUCGUCUu----CUUGU-----------AGUG-GUUGC- -5'
27692 5' -47.8 NC_005882.1 + 27135 0.69 0.825079
Target:  5'- -gGCGAGCAGccGcagcgggccgauaAACGUCAUCAGCa -3'
miRNA:   3'- caUGCUCGUCuuC-------------UUGUAGUGGUUGc -5'
27692 5' -47.8 NC_005882.1 + 29025 0.7 0.816045
Target:  5'- -aACGGGCucAGGGACGUCggcaACCGACGu -3'
miRNA:   3'- caUGCUCGucUUCUUGUAG----UGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 31985 0.7 0.784644
Target:  5'- cGUACGAGCuGGAGAAUcgcuUCGCUAGg- -3'
miRNA:   3'- -CAUGCUCGuCUUCUUGu---AGUGGUUgc -5'
27692 5' -47.8 NC_005882.1 + 23622 0.7 0.773783
Target:  5'- cGUACGGGCG-----ACGUCAUCAACGa -3'
miRNA:   3'- -CAUGCUCGUcuucuUGUAGUGGUUGC- -5'
27692 5' -47.8 NC_005882.1 + 26034 0.71 0.762748
Target:  5'- gGUuCGAGCuGAAGGAUAUgGCCAAgGc -3'
miRNA:   3'- -CAuGCUCGuCUUCUUGUAgUGGUUgC- -5'
27692 5' -47.8 NC_005882.1 + 29000 1.1 0.00295
Target:  5'- uGUACGAGCAGAAGAACAUCACCAACGa -3'
miRNA:   3'- -CAUGCUCGUCUUCUUGUAGUGGUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.