miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27693 3' -58.6 NC_005882.1 + 11692 0.66 0.484516
Target:  5'- aCUGGCu-CGAUCGCGGgCUuuucccguaCGCGcGGc -3'
miRNA:   3'- cGACCGcuGCUAGCGCC-GA---------GCGCaCC- -5'
27693 3' -58.6 NC_005882.1 + 25576 0.66 0.484516
Target:  5'- gGCUGGCGcGCGG-CGCcGCgcuGCGUGa -3'
miRNA:   3'- -CGACCGC-UGCUaGCGcCGag-CGCACc -5'
27693 3' -58.6 NC_005882.1 + 23155 0.66 0.454571
Target:  5'- aGCUGGaGGCGAuggccguccagcUCGgGGCgaUCGCGUa- -3'
miRNA:   3'- -CGACCgCUGCU------------AGCgCCG--AGCGCAcc -5'
27693 3' -58.6 NC_005882.1 + 16971 0.66 0.444814
Target:  5'- uGCcGGCGugaaACGcgCGcCGGCUUGCGUc- -3'
miRNA:   3'- -CGaCCGC----UGCuaGC-GCCGAGCGCAcc -5'
27693 3' -58.6 NC_005882.1 + 934 0.66 0.444814
Target:  5'- aGCUGGCG--GAUCGgGGCgUCGUGc-- -3'
miRNA:   3'- -CGACCGCugCUAGCgCCG-AGCGCacc -5'
27693 3' -58.6 NC_005882.1 + 3758 0.67 0.425658
Target:  5'- aGCUGGCccCGcUCGaCGGCcCGCGccUGGa -3'
miRNA:   3'- -CGACCGcuGCuAGC-GCCGaGCGC--ACC- -5'
27693 3' -58.6 NC_005882.1 + 21795 0.67 0.407001
Target:  5'- aCUGGCGACGGcgCGCGGgaccuucauUUCGCccGGc -3'
miRNA:   3'- cGACCGCUGCUa-GCGCC---------GAGCGcaCC- -5'
27693 3' -58.6 NC_005882.1 + 36481 0.67 0.397868
Target:  5'- uGCaaugGGCGACcacuacccaGAUCGCGGCgaaagCGCGc-- -3'
miRNA:   3'- -CGa---CCGCUG---------CUAGCGCCGa----GCGCacc -5'
27693 3' -58.6 NC_005882.1 + 31374 0.67 0.38
Target:  5'- aGCUGGuCGGCGugaCGCGGCUgccggcgcagccCGCGa-- -3'
miRNA:   3'- -CGACC-GCUGCua-GCGCCGA------------GCGCacc -5'
27693 3' -58.6 NC_005882.1 + 2919 0.68 0.371269
Target:  5'- uCUGGU-ACGuuguUCGCGGCUCGCa--- -3'
miRNA:   3'- cGACCGcUGCu---AGCGCCGAGCGcacc -5'
27693 3' -58.6 NC_005882.1 + 26577 0.68 0.371269
Target:  5'- aGCUGGCGACcGUCGCguggGGC-CGCu--- -3'
miRNA:   3'- -CGACCGCUGcUAGCG----CCGaGCGcacc -5'
27693 3' -58.6 NC_005882.1 + 28043 0.68 0.337737
Target:  5'- aGCUGGCGAagcUGcgCGCGGCggugagCGCa--- -3'
miRNA:   3'- -CGACCGCU---GCuaGCGCCGa-----GCGcacc -5'
27693 3' -58.6 NC_005882.1 + 27595 0.7 0.270554
Target:  5'- gGCaUGGCGACGcaggcCGCGGC-CGCGg-- -3'
miRNA:   3'- -CG-ACCGCUGCua---GCGCCGaGCGCacc -5'
27693 3' -58.6 NC_005882.1 + 13067 0.7 0.244328
Target:  5'- gGCUGGCGuCGA-CGUGGUggGCGaGGa -3'
miRNA:   3'- -CGACCGCuGCUaGCGCCGagCGCaCC- -5'
27693 3' -58.6 NC_005882.1 + 26174 0.71 0.23811
Target:  5'- gGCUGGCGAUGAUCuGCGucagCGCGUccuGGc -3'
miRNA:   3'- -CGACCGCUGCUAG-CGCcga-GCGCA---CC- -5'
27693 3' -58.6 NC_005882.1 + 12554 0.72 0.203542
Target:  5'- cGCU-GCGGCGAUCggcgcacugGCGGCUgGCGcGGu -3'
miRNA:   3'- -CGAcCGCUGCUAG---------CGCCGAgCGCaCC- -5'
27693 3' -58.6 NC_005882.1 + 4731 0.72 0.203004
Target:  5'- aGCUcGGCGACGAUCGCGucgagcuGCUCuuGCGg-- -3'
miRNA:   3'- -CGA-CCGCUGCUAGCGC-------CGAG--CGCacc -5'
27693 3' -58.6 NC_005882.1 + 28542 0.75 0.128015
Target:  5'- cGCUGGCGACagcuucgccagugGAUCaGCGGCUUGCuUGa -3'
miRNA:   3'- -CGACCGCUG-------------CUAG-CGCCGAGCGcACc -5'
27693 3' -58.6 NC_005882.1 + 25135 0.76 0.09706
Target:  5'- cGC-GGCGGCGAUCaaGGCcaUCGUGUGGc -3'
miRNA:   3'- -CGaCCGCUGCUAGcgCCG--AGCGCACC- -5'
27693 3' -58.6 NC_005882.1 + 29327 1.11 0.000232
Target:  5'- cGCUGGCGACGAUCGCGGCUCGCGUGGc -3'
miRNA:   3'- -CGACCGCUGCUAGCGCCGAGCGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.